Re: [Samtools-help] CRAM index files

[jkb <jk...@sa...>]

 

On 2015-08-07 16:50, Edward Kwiatkowski wrote: 

> I want to create a BAI on a CRAM. When I do 
> 
> samtools index -b xyz.cram 
> 
> it still gives me a CRAI instead. How can I use samtools to produce BAI's from CRAM files?

Samtools doesn't support use of BAI for CRAM. We use BAI for BAM and
CRAI for CRAM only. Can you elaborate why you require BAI for CRAM
please? 

Thanks, 

James 
 


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