[Samtools-help] samtools api to get pileup information

[Xiaobin X. <xi...@em...>]

Dear Samtools,

I am a freshmen in C, and I want to access the read bases (e.g. ,.$.....,,.,.,...,,,.,..^+. ) and base qualities (e.g. <<<+;<<<<<<<<<<<=<;<;7<&) by samtools api . Can you please tell me which function is used to generate such two information? Thanks a lot.


An example,
"seq1 272 T 24  ,.$.....,,.,.,...,,,.,..^+. <<<+;<<<<<<<<<<<=<;<;7<&"


Best,

Xiaobin
xi...@em...