Re: [Samtools-devel] mutithreaded samtools/bcftools

[Heng Li <lh...@sa...>]

On Mar 25, 2012, at 2:09 PM, Cittaro Davide wrote:

> Hi, I'm trying MT tree of samtools, which samtools fuctions are fully threaded? Is samtools mpileup  / bcftools view somehow threaded?

Samtools view/merge/sort are using multi-threaded compression. Mpileup does not produce BAM, so not multi-threaded.

Heng

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