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From: Richard C. <rco...@bc...> - 2012-02-23 17:46:54
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Hi all, Does anyone know how these numbers are calculated? ie, are they based on flags, the cigar, or sequence string? PF_MISMATCH_RATE 0.47867 0.476719 0.477708 PF_HQ_ERROR_RATE 0.48216 0.481005 0.481589 PF_INDEL_RATE 0.00009 0.000095 0.000093 Also, a question about interpretation... is this telling me that .477 percent of my aligned bases are mismatch errors? thanks, RIchard |