[Samtools-help] reads not mapped

[Adrian J. <ori...@gm...>]

Hello:
apologies for asking a trivial question.

I have a paired-end data and I want to capture those sequences that :
a. both pairs and reads not mapped to genome
b. pair mapped to genome but mate not mapped near to its pair


I am using samtools Version: 0.1.8 (r613).


Thank you.

Adrian