[Samtools-announce] Picard release 1.39

[Alec W. <al...@br...>]

Picard release 1.39
2 February 2011

- FastqToSam.java: Added options to set the sequencing center, PI, DS, 
DT tags in read group.

- CollectGcBiasMetrics.java: Fixed a bug whereby windows from a 
reference sequence were ignored if the reference sequence had no reads 
aligned to it.

- CollectGcBiasMetrics; When counting errors in GC window, add # of 
inserted bases and # of deleted bases to # of mismatched bases.

- CommandLineParser.java: Eliminate requirement that fields annotated 
with @Option and @Usage be public.



SourceForge appears to be partially functional now.  I am not able to 
browse the SVN repository via HTTP, but other SVN operations seem to be 
working.

-Alec