Re: [Samtools-help] samTools on solaris 10

[Duhaime J. <Joh...@ir...>]

Eureka! Thank you so much. Everything is fine now!
samtools.static_lz.osol64 view -bSt allMM9.fa.fai s_3.sam > s_3.bam
samtools.static_lz.osol64 sort s_3.bam s_3out
samtools.static_lz.osol64 rmdup s_3out.bam s_3out_nodup.bam
work perfectly.

Johanne

De : Davide Cittaro [mailto:dav...@if...]
Envoyé : 22 juin 2010 05:29
À : Duhaime Johanne
Cc : sam...@li...
Objet : Re: [Samtools-help] samTools on solaris 10


On Jun 21, 2010, at 10:18 PM, Davide Cittaro wrote:



On Jun 21, 2010, at 10:14 PM, Duhaime Johanne wrote:



Compiling:
Still struggling on that.


I'm going to provide you a static executable tomorrow.


Try this

http://dl.dropbox.com/u/275606/samtools.static_lz.osol64

It is not fully static, but only "system" libraries should be linked now. It should not complain about libz nor libncurses...

d


d

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Davide Cittaro

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