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From: <rob...@no...> - 2010-05-24 03:03:12
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Dear All, I need to get the total read counts which are mapped to the reference genome from SAM file. Which field from the SAM file will give such information. Information that I need to get as list here: 1) Total read counts with 0 mismatch, 1 mismatch, and 2 mismatch from SAM file 2) Total unique read counts from SAM file are mapped the reference genome. 3) Any software tool or Unix command can parse the information out the SAM file Thanks Robin _________________________ CONFIDENTIALITY NOTICE The information contained in this e-mail message is intended only for the exclusive use of the individual or entity named above and may contain information that is privileged, confidential or exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivery of the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify the sender immediately by e-mail and delete the material from any computer. Thank you. |