From: Heng Li <lh...@sa...> - 2009-11-30 20:25:13
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cigar_len is the number of cigar operations in the cigar string. It is stored in BAM as the lower 16 bits in "flag_nc". Heng On Mon, Nov 30, 2009 at 03:17:48PM -0500, Kanwei Li wrote: > Hi all, > > The spec says there's a cigar string in the BAM definition, but I > can't seem to find cigar_len anywhere. How do I compute it? > > Thanks, > > Kanwei > Galaxy Team > > ------------------------------------------------------------------------------ > Join us December 9, 2009 for the Red Hat Virtual Experience, > a free event focused on virtualization and cloud computing. > Attend in-depth sessions from your desk. Your couch. Anywhere. > http://p.sf.net/sfu/redhat-sfdev2dev > _______________________________________________ > Samtools-help mailing list > Sam...@li... > https://lists.sourceforge.net/lists/listinfo/samtools-help -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. |