Re: [Samtools-help] SAMtools and GBrowse: Poster and Tutorial

[Pratap, A. <AP...@so...>]

Hi Dave

 

Something I was silently waiting for. Much appreciated.

 

Thanks,

-Abhi

 

From: Dave Clements [mailto:cle...@ne...] 
Sent: Thursday, November 05, 2009 12:39 PM
To: SAMtools Development List; SAMtools Help List
Subject: [Samtools-help] SAMtools and GBrowse: Poster and Tutorial

 

Hello all,

Two resources are now available explaining how to use SAMtools with the
GBrowse genome browser:

GBrowse and Next Generation Sequencing Data
  http://gmod.org/wiki/Image:GBrowse_nextgen_poster.pdf
  This poster by Scott Cain (and others) explains how to use SAMtools
with 
  GBrowse 1.70 and GBrowse 2.  Previously SAMtools could only be used 
  with GBrowse 2, which is pre-release.

GBrowse NGS Tutorial
  http://gmod.org/wiki/GBrowse_NGS_Tutorial
  This step by step tutorial walks you through configuring GBrowse 2 to
display
  data in SAM databases.  It includes a VMware image to work with, and
uses the 
  example human data that is included with SAMtools.

Please let Scott or myself know if you have any questions.

Thanks,

Dave C.
GMOD Help Desk

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