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From: Markus H. <mar...@mh...> - 2006-07-11 20:28:30
|
Hi David, David Nebauer writes: > Seems like only a couple of days ago I mentioned in an email your > propensity for using cutting edge features of underlying tools... > Well, to my defense I have to say that the libdbi requirements are not related to some must-have-the-latest attitude of mine. The main driving force behind the libdbi development in the past year or so were the requirements of RefDB - I simply extended libdbi in order to be able to improve RefDB. Usually I'd develop both more or less in parallel until most of things work. Then I'd release libdbi, finish RefDB based on the features I've added, and then release RefDB. More often than not the time between these releases was too short to get libdbi packaged in time. I'm really sorry about these inconveniences, but rest assured it is not (solely) related to ill-will or just to being nasty on my end. That said, I've got docbook2X 0.8.5 on my FreeBSD box. That version was released 2004-08-12. Not exactly bleeding edge... regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: David N. <dav...@sw...> - 2006-07-11 17:47:48
|
Hi Markus, > The conversion does, in fact, produces a file called 'untitled.texi'. > It obviously contains the output meant for 'refdb-mode.texi'. I > changed the Makefile.am rule to > ----------------------------------------------------------------------------------------- > > refdb-mode.texi: refdb-mode-manual-stripped.xml > docbook2x-texi refdb-mode-manual-stripped.xml > sed -i -e 's:\(@setfilename\) untitled:\1 refdb-mode:' > untitled.texi mv untitled.texi refdb-mode.texi > ----------------------------------------------------------------------------------------- > The docbook2x-texi command is very poorly documented, but after some experimentation I've found the following command works on my debian box: ------------------------------------------------------------------------------------ refdb-mode.texi: refdb-mode-manual-stripped.xml docbook2x-texi --to-stdout refdb-mode-manual-stripped.xml > $@ ------------------------------------------------------------------------------------ If that form is portable perhaps you could use it in 'Makefile.am'? Then all I'd have to do is change 'docbook2texi' to 'docbook2x-texi'. Regards, David. |
From: <ste...@jo...> - 2006-07-11 17:00:26
|
Dan O'Donnell a =C3=A9crit : > I just had the same problem with a reinstall. In my case, I needed to > edit login.php to change the paths to refdbc and refdba. In my case I > needed to point them at /usr/bin/ rather than /usr/local/bin/. Perhaps > it is the same issue with you? >=20 > -d >=20 Nice catch, but i had already checked this, i've went quite extensively=20 on the phpweb directory ,-) Another hint? St=C3=A9phane --=20 St=C3=A9phane T=C3=A9letch=C3=A9a, PhD. http://www.stele= tch.org Unit=C3=A9 Math=C3=A9matique Informatique et G=C3=A9nome http://migale.jo= uy.inra.fr/mig INRA, Domaine de Vilvert T=C3=A9l : (33) 134 652 891 78352 Jouy-en-Josas cedex, France Fax : (33) 134 652 901 |
From: David N. <dav...@sw...> - 2006-07-11 16:51:31
|
Hi Markus, > I've defined keybindings for the most common commands of refdb-mode > > I'd like to ask everyone who's interested to check out the module from > Subversion and give it a try (you can get away with retrieving > refdb-mode.el through the web interface). I've just noticed there is no indication anywhere on the refdb website that refdb-elisp is available as a deb. It's not mentioned on the emacs page, the download page, nor is it specifically mentioned on the Debian installation page. Regards, David. |
From: Rich S. <rsh...@ap...> - 2006-07-11 16:19:34
|
On Tue, 11 Jul 2006, Dan O'Donnell wrote: > This is something I'd certainly like to see, and from what I've been > reading on Procite-l, it is one of the main reasons users of that program > don't want to switch to endnote (which doesn't have it) and are > considering refworks (which does). Markus, I don't use any of the winduhs applications because we run only linux here, but project-specific lists would be very useful for me, too. My need for document-specific references is one of the reasons I've not used any bibliographic databases since I left the DOS world about nine years ago. Since the topics of my writing can focus on water quality, fish, endangered species, environmental impact assessments, various natural resource industries, and more trying to manipulate a humongeous list for such disparate subjects is not terribly efficient. So, I've built ad hoc, document-specific bibtex lists when I've needed them. Being able to do such partitioning within RefDB would be very nice. Thanks, Rich -- Richard B. Shepard, Ph.D. | The Environmental Permitting Applied Ecosystem Services, Inc.(TM) | Accelerator <http://www.appl-ecosys.com> Voice: 503-667-4517 Fax: 503-667-8863 |
From: Dan O'D. <dan...@ul...> - 2006-07-11 16:10:56
|
Dear Markus, This is something I'd certainly like to see, and from what I've been reading on Procite-l, it is one of the main reasons users of that program don't want to switch to endnote (which doesn't have it) and are considering refworks (which does). I also checked with my wife, a non-computery person, if she ever uses the feature in procite, and she said she does all the time. Basically people use it to compile ad hoc working bibliographies for individual articles, chapters, or courses. -d On Sun, 2006-09-07 at 16:19 +0200, Markus Hoenicka wrote: > Daniel O'Donnell writes: > > You could presumably do this in refdb by creating different users each > > with a personal list. But is there a native way to doing multiple > > personal lists without creating extra users? > > > > There is no such thing currently. But the required changes to > implement this seem rather small. The pickref command would have to > associate references with named lists instead of with the > username. I'll have a look at the code to get an estimate of how much > I'd have to change to support this. In any case, if there is a demand, > I'll be happy to implement this. > > regards, > Markus > |
From: Dan O'D. <dan...@ul...> - 2006-07-11 16:05:25
|
I just checked the svn: the problem may well lie with login.php if you are using the svn version (the one with the navigation on the right in the sign in screen). I didn't set up the <bindir> properly in the .ini version of the file. I've just fixed it so that people downloading the svn version should now have the login work. -d On Tue, 2006-11-07 at 15:54 +0200, St=C3=A9phane T=C3=A9letch=C3=A9a wrote: > Hi, >=20 > I've tried to use the php interface (furnished in phpweb) but without luc= k. >=20 > I can connect to refdb via the command-line and see some properties (and=20 > import references) but from the interface i'm not able to do anything. >=20 > First, i thought it was coming from a permission problem so un chmod'ed=20 > the phpweb directory 1777. > Second, i found out (or read better the manual ...) that i had may be=20 > missed the php5-session plugin (so i installed it and restarted apache). > Third, i used another php-driven applicaiton (spip) to check if the php=20 > setup was correct. (SPIP works fine). >=20 > So far, i've been able to modify a little some php file to display the=20 > user i'm using and the database i'm connected to. >=20 > It seems at the beginning (at the login script), everything is ok : the=20 > user is correct and the database also. After this login script, the=20 > informations get somewhat lost (without any trace on the logs): it seems=20 > i'm no more logged as the refdb user. >=20 > Do you have any hint about the direction i should have a look at ? >=20 > FYI, i'm using Mandriva Linux (coooker, developpment version) and: > apache-base-2.2.2-6mdv2007.0.i586.rpm > apache-mod_php-5.1.4-1mdk.i586.rpm > php-session-5.1.4-4mdk.i586.rpm >=20 > So far, i've tried with pgsql and various input references (pubmed,=20 > pubmed/XML, ris ...). >=20 > Thanks for comments, i'm really close to the refdb'rpm ;-) >=20 > St=C3=A9phane >=20 |
From: Dan O'D. <dan...@ul...> - 2006-07-11 15:58:59
|
I just had the same problem with a reinstall. In my case, I needed to edit login.php to change the paths to refdbc and refdba. In my case I needed to point them at /usr/bin/ rather than /usr/local/bin/. Perhaps it is the same issue with you? -d On Tue, 2006-11-07 at 15:54 +0200, St=C3=A9phane T=C3=A9letch=C3=A9a wrote: > Hi, >=20 > I've tried to use the php interface (furnished in phpweb) but without luc= k. >=20 > I can connect to refdb via the command-line and see some properties (and=20 > import references) but from the interface i'm not able to do anything. >=20 > First, i thought it was coming from a permission problem so un chmod'ed=20 > the phpweb directory 1777. > Second, i found out (or read better the manual ...) that i had may be=20 > missed the php5-session plugin (so i installed it and restarted apache). > Third, i used another php-driven applicaiton (spip) to check if the php=20 > setup was correct. (SPIP works fine). >=20 > So far, i've been able to modify a little some php file to display the=20 > user i'm using and the database i'm connected to. >=20 > It seems at the beginning (at the login script), everything is ok : the=20 > user is correct and the database also. After this login script, the=20 > informations get somewhat lost (without any trace on the logs): it seems=20 > i'm no more logged as the refdb user. >=20 > Do you have any hint about the direction i should have a look at ? >=20 > FYI, i'm using Mandriva Linux (coooker, developpment version) and: > apache-base-2.2.2-6mdv2007.0.i586.rpm > apache-mod_php-5.1.4-1mdk.i586.rpm > php-session-5.1.4-4mdk.i586.rpm >=20 > So far, i've tried with pgsql and various input references (pubmed,=20 > pubmed/XML, ris ...). >=20 > Thanks for comments, i'm really close to the refdb'rpm ;-) >=20 > St=C3=A9phane >=20 |
From: Markus H. <mar...@mh...> - 2006-07-11 15:56:32
|
Dominik Reusser <dre...@un...> was heard to say: > In my opinion, variables with no meaning should produce some sort of warning, > at least if the log-level is set to debug. > This is a good point. I'll add a warning for unknown variable names. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: <ste...@jo...> - 2006-07-11 15:34:52
|
Z F a =E9crit : > Dear St=E9phane T=E9letch=E9a >=20 > Did you, by any chance, modify php.ini file (on my system it is > in /etc/php5/apache2 >=20 > to have these: > register_globals =3D On > session.save_path =3D /tmp > session.auto_start =3D 1 >=20 > Lazar I have : session.save_path =3D "/tmp" session.use_cookies =3D 1 session.auto_start =3D 1 register_globals =3D On (not in the same file though, in Mandriva it is in /etc/php.d/refdb.ini=20 and is sourced). Does the order import ? St=E9phane --=20 St=E9phane T=E9letch=E9a, PhD. http://www.steletch.org Unit=E9 Math=E9matique Informatique et G=E9nome http://migale.jouy.inra.f= r/mig INRA, Domaine de Vilvert T=E9l : (33) 134 652 891 78352 Jouy-en-Josas cedex, France Fax : (33) 134 652 901 |
From: Z F <mai...@ya...> - 2006-07-11 15:27:11
|
Dear Stéphane Téletchéa Did you, by any chance, modify php.ini file (on my system it is in /etc/php5/apache2 to have these: register_globals = On session.save_path = /tmp session.auto_start = 1 Lazar --- Stéphane Téletchéa <ste...@jo...> wrote: > Hi, > > I've tried to use the php interface (furnished in phpweb) but without > luck. > > I can connect to refdb via the command-line and see some properties > (and > import references) but from the interface i'm not able to do > anything. > > First, i thought it was coming from a permission problem so un > chmod'ed > the phpweb directory 1777. > Second, i found out (or read better the manual ...) that i had may be > > missed the php5-session plugin (so i installed it and restarted > apache). > Third, i used another php-driven applicaiton (spip) to check if the > php > setup was correct. (SPIP works fine). > > So far, i've been able to modify a little some php file to display > the > user i'm using and the database i'm connected to. > > It seems at the beginning (at the login script), everything is ok : > the > user is correct and the database also. After this login script, the > informations get somewhat lost (without any trace on the logs): it > seems > i'm no more logged as the refdb user. > > Do you have any hint about the direction i should have a look at ? > > FYI, i'm using Mandriva Linux (coooker, developpment version) and: > apache-base-2.2.2-6mdv2007.0.i586.rpm > apache-mod_php-5.1.4-1mdk.i586.rpm > php-session-5.1.4-4mdk.i586.rpm > > So far, i've tried with pgsql and various input references (pubmed, > pubmed/XML, ris ...). > > Thanks for comments, i'm really close to the refdb'rpm ;-) > > Stéphane > > -- > Stéphane Téletchéa, PhD. http://www.steletch.org > Unité Mathématique Informatique et Génome > http://migale.jouy.inra.fr/mig > INRA, Domaine de Vilvert Tél : (33) 134 652 891 > 78352 Jouy-en-Josas cedex, France Fax : (33) 134 652 901 > > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, > security? > Get stuff done quickly with pre-integrated technology to make your > job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache > Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > Refdb-users mailing list > Ref...@li... > https://lists.sourceforge.net/lists/listinfo/refdb-users > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com |
From: Markus H. <mar...@mh...> - 2006-07-11 14:38:44
|
Hi David, David Nebauer <dav...@sw...> was heard to say: > Here is the install transcript. The only change made is to Makefile.am > to rename 'docbook2texi' to the debian equivalent: docbook2x-texi. > Thanks for the debug info. > ./striptable.pl < refdb-mode-manual.xml > refdb-mode-manual-stripped.xml > docbook2x-texi refdb-mode-manual-stripped.xml >/book/chapter[@id='chapter-commands']/sect1[1]/sect2[@id='submenu-get-references-on-region']/sect3[@id='command-get-references-author-region']: > Node name collision [...] > refdb-mode.texi: No such file or directory Looks like docbook2x-texi fails to transform the document, otherwise there would be a refdb-mode.texi. I've checked the tool homepage. The Debian version appears to be based on 0.8.3 whereas 0.8.7 is current. I've downloaded the current version on Cygwin and it works ok. I don't know which version I have on my FreeBSD box, but I assume it is newer than 0.8.3. I'm afraid you'll have to upgrade docbook2x from the sources, or patch the Makefile to leave out the transformation to the texi file, or build from a release tarball which ships the texi file. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: <ste...@jo...> - 2006-07-11 14:26:59
|
Hi, I've tried to use the php interface (furnished in phpweb) but without luc= k. I can connect to refdb via the command-line and see some properties (and=20 import references) but from the interface i'm not able to do anything. First, i thought it was coming from a permission problem so un chmod'ed=20 the phpweb directory 1777. Second, i found out (or read better the manual ...) that i had may be=20 missed the php5-session plugin (so i installed it and restarted apache). Third, i used another php-driven applicaiton (spip) to check if the php=20 setup was correct. (SPIP works fine). So far, i've been able to modify a little some php file to display the=20 user i'm using and the database i'm connected to. It seems at the beginning (at the login script), everything is ok : the=20 user is correct and the database also. After this login script, the=20 informations get somewhat lost (without any trace on the logs): it seems=20 i'm no more logged as the refdb user. Do you have any hint about the direction i should have a look at ? FYI, i'm using Mandriva Linux (coooker, developpment version) and: apache-base-2.2.2-6mdv2007.0.i586.rpm apache-mod_php-5.1.4-1mdk.i586.rpm php-session-5.1.4-4mdk.i586.rpm So far, i've tried with pgsql and various input references (pubmed,=20 pubmed/XML, ris ...). Thanks for comments, i'm really close to the refdb'rpm ;-) St=E9phane --=20 St=E9phane T=E9letch=E9a, PhD. http://www.steletch.org Unit=E9 Math=E9matique Informatique et G=E9nome http://migale.jouy.inra.f= r/mig INRA, Domaine de Vilvert T=E9l : (33) 134 652 891 78352 Jouy-en-Josas cedex, France Fax : (33) 134 652 901 |
From: David N. <dav...@sw...> - 2006-07-11 13:12:24
|
Hi Markus, > If this problem persists on your box, could you please send me the > Makefiles (Makefile, Makefile.in) that the autotools and configure > create? I'd like to check where the refdb-mode.texi target gets lost. Here is the install transcript. The only change made is to Makefile.am to rename 'docbook2texi' to the debian equivalent: docbook2x-texi. --------------------------------------------------------------------------------------------- << run autogen.sh >> david@hezmana:temp$ ./autogen.sh /usr/share/aclocal/libmcrypt.m4:17: warning: underquoted definition of AM_PATH_LIBMCRYPT run info '(automake)Extending aclocal' or see http://sources.redhat.com/automake/automake.html#Extending%20aclocal /usr/share/aclocal/libart.m4:11: warning: underquoted definition of AM_PATH_LIBART /usr/share/aclocal/glib.m4:8: warning: underquoted definition of AM_PATH_GLIB configure.in: installing `./install-sh' configure.in: installing `./missing' Makefile.am:9: installing `./texinfo.tex' Makefile.am:2: installing `./elisp-comp' << run configure script >> david@hezmana:temp$ ./configure checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for emacs... no checking for xemacs... no checking where .elc files should go... ${datadir}/emacs/site-lisp checking for refdbd... /usr/bin/refdbd checking for refdbctl... /usr/bin/refdbctl checking for refdbc... /usr/bin/refdbc checking for refdba... /usr/bin/refdba checking for refdbnd... /usr/bin/refdbnd checking for sudo... /usr/bin/sudo checking for gmake... no checking for make... /usr/bin/make checking for acroread... /usr/bin/acroread checking for gv... /usr/bin/gv checking for openoffice.org... no checking for abiword... no checking for ted... /usr/bin/ted checking for sh... /bin/sh configure: creating ./config.status config.status: creating Makefile << make fails >> david@hezmana:temp$ make ./striptable.pl < refdb-mode-manual.xml > refdb-mode-manual-stripped.xml docbook2x-texi refdb-mode-manual-stripped.xml /book/chapter[@id='chapter-commands']/sect1[1]/sect2[@id='submenu-get-references-on-region']/sect3[@id='command-get-references-author-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[1]/sect2[@id='submenu-get-references-on-region']/sect3[@id='command-get-references-title-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[1]/sect2[@id='submenu-get-references-on-region']/sect3[@id='command-get-references-keyword-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[1]/sect2[@id='submenu-get-references-on-region']/sect3[@id='command-get-references-periodical-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[1]/sect2[@id='submenu-get-references-on-region']/sect3[@id='command-get-references-id-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes']/sect3[@id='command-get-notes-title']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes']/sect3[@id='command-get-notes-title-regexp']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes']/sect3[@id='command-get-notes-keyword']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes']/sect3[@id='command-get-notes-keyword-regexp']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes']/sect3[@id='command-get-notes-citationkey']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-title-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-keyword-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-authorlink-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-keywordlink-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-periodicallink-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-idlink-region']: Node name collision /book/chapter[@id='chapter-commands']/sect1[2]/sect2[@id='submenu-get-notes-on-region']/sect3[@id='command-get-notes-citekeylink-region']: Node name collision restore=: && \ backupdir=".am$$" && \ am__cwd=`pwd` && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ for f in refdb-mode.info refdb-mode.info-[0-9] refdb-mode.info-[0-9][0-9] refdb-mode.i[0-9] refdb-mode.i[0-9][0-9]; do \ if test -f $f; then \ mv $f $backupdir; \ restore=mv; \ fi; \ done; \ cd "$am__cwd"; \ if /bin/sh /home/david/tmp/temp/missing --run makeinfo -I . \ -o refdb-mode.info refdb-mode.texi; \ then \ rc=0; \ cd .; \ else \ rc=$?; \ cd . && \ $restore $backupdir/* `echo "./refdb-mode.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; \ exit $rc refdb-mode.texi: No such file or directory make: *** [refdb-mode.info] Error 1 << Makefile.am >> david@hezmana:temp$ cat Makefile.am ## Process this file with automake to produce Makefile.in lisp_LISP = ris.el refdb-mode.el sysconf_DATA = refdb-mode-config.el docdir = $(datadir)/doc/$(PACKAGE)-$(VERSION) doc_DATA = refdb-mode-manual.pdf refdb-mode-manual/* info_TEXINFOS = refdb-mode.texi EXTRA_DIST = $(lisp_LISP) $(doc_DATA) $(manual_DATA) refdb-mode-manual.xml refdb-mode-manual-stripped.xml refdb-mode.texi refdb-mode-config.el.in autogen.sh manual-fo.xsl striptable.pl MAINTAINERCLEANFILES = $(doc_DATA) refdb-mode-manual.fo CLEANFILES = refdb-mode-config.el fosheet="manual-fo.xsl" htmlsheet="http://docbook.sourceforge.net/release/xsl/current/html/chunk.xsl" all: refdb-mode-config.el refdb-mode-manual.pdf refdb-mode-manual/* refdb-mode.texi refdb-mode-config.el: refdb-mode-config.el.in sed 's%<myrtfviewer>%$(myrtfviewer)%' < $(srcdir)/refdb-mode-config.el.in | \ sed 's%<mypsviewer>%$(mypsviewer)%' | \ sed 's%<mypdfviewer>%$(mypdfviewer)%' | \ sed 's%<mygnumake>%$(mygnumake)%' | \ sed 's%<myshell>%$(myshell)%' | \ sed 's%<sysconfdir>%$(sysconfdir)%' > refdb-mode-config.el refdb-mode-manual.pdf: refdb-mode-manual.xml xsltproc --param fop.extensions 1 --stringparam funcsynopsis.style ansi $(fosheet) refdb-mode-manual.xml > refdb-mode-manual.fo fop -fo refdb-mode-manual.fo -pdf refdb-mode-manual.pdf refdb-mode-manual/*: refdb-mode-manual.xml rm -rf refdb-mode-manual/* mkdir -p refdb-mode-manual xsltproc --stringparam funcsynopsis.style ansi --stringparam html.stylesheet manual.css -o refdb-mode-manual/ $(htmlsheet) refdb-mode-manual.xml cp manual.css refdb-mode-manual # the stripped version of the manual is required because docbook2texi cannot # handle complex tables refdb-mode-manual-stripped.xml: refdb-mode-manual.xml ./striptable.pl < refdb-mode-manual.xml > refdb-mode-manual-stripped.xml refdb-mode.texi: refdb-mode-manual-stripped.xml docbook2x-texi refdb-mode-manual-stripped.xml << Makefile.in >> david@hezmana:temp$ cat Makefile.in # Makefile.in generated by automake 1.8.5 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, # 2003, 2004 Free Software Foundation, Inc. # This Makefile.in is free software; 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\ else : ; fi install-man: installcheck-am: maintainer-clean: maintainer-clean-am -rm -f $(am__CONFIG_DISTCLEAN_FILES) -rm -rf $(top_srcdir)/autom4te.cache -rm -f Makefile maintainer-clean-am: distclean-am maintainer-clean-aminfo \ maintainer-clean-generic mostlyclean: mostlyclean-am mostlyclean-am: mostlyclean-aminfo mostlyclean-generic pdf: pdf-am pdf-am: $(PDFS) ps: ps-am ps-am: $(PSS) uninstall-am: uninstall-docDATA uninstall-info-am uninstall-lispLISP \ uninstall-sysconfDATA .PHONY: all all-am am--refresh check check-am clean clean-generic \ clean-lisp dist dist-all dist-bzip2 dist-gzip dist-info \ dist-shar dist-tarZ dist-zip distcheck distclean \ distclean-generic distcleancheck distdir distuninstallcheck \ dvi dvi-am html html-am info info-am install install-am \ install-data install-data-am install-docDATA install-exec \ install-exec-am install-info install-info-am install-lispLISP \ install-man install-strip install-sysconfDATA installcheck \ installcheck-am installdirs maintainer-clean \ maintainer-clean-aminfo maintainer-clean-generic mostlyclean \ mostlyclean-aminfo mostlyclean-generic pdf pdf-am ps ps-am \ uninstall uninstall-am uninstall-docDATA uninstall-info-am \ uninstall-lispLISP uninstall-sysconfDATA all: refdb-mode-config.el refdb-mode-manual.pdf refdb-mode-manual/* refdb-mode.texi refdb-mode-config.el: refdb-mode-config.el.in sed 's%<myrtfviewer>%$(myrtfviewer)%' < $(srcdir)/refdb-mode-config.el.in | \ sed 's%<mypsviewer>%$(mypsviewer)%' | \ sed 's%<mypdfviewer>%$(mypdfviewer)%' | \ sed 's%<mygnumake>%$(mygnumake)%' | \ sed 's%<myshell>%$(myshell)%' | \ sed 's%<sysconfdir>%$(sysconfdir)%' > refdb-mode-config.el refdb-mode-manual.pdf: refdb-mode-manual.xml xsltproc --param fop.extensions 1 --stringparam funcsynopsis.style ansi $(fosheet) refdb-mode-manual.xml > refdb-mode-manual.fo fop -fo refdb-mode-manual.fo -pdf refdb-mode-manual.pdf refdb-mode-manual/*: refdb-mode-manual.xml rm -rf refdb-mode-manual/* mkdir -p refdb-mode-manual xsltproc --stringparam funcsynopsis.style ansi --stringparam html.stylesheet manual.css -o refdb-mode-manual/ $(htmlsheet) refdb-mode-manual.xml cp manual.css refdb-mode-manual # the stripped version of the manual is required because docbook2texi cannot # handle complex tables refdb-mode-manual-stripped.xml: refdb-mode-manual.xml ./striptable.pl < refdb-mode-manual.xml > refdb-mode-manual-stripped.xml refdb-mode.texi: refdb-mode-manual-stripped.xml docbook2x-texi refdb-mode-manual-stripped.xml # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: david@hezmana:temp$ --------------------------------------------------------------------------------------------- Regards, David. |
From: Rich S. <rsh...@ap...> - 2006-07-10 21:47:41
|
On Mon, 10 Jul 2006, Markus Hoenicka wrote: > :-) These commands are part of ris-mode, which is the major mode to edit > RIS files. ris-mode has had keybindings for a while. refdb-mode is a minor > mode to interact with a RefDB server. Markus, D'oh! Of course! I prefer working with the references from the command line, external to emacs, so I decided to not install refdb-mode.el. I was confusing the two. Mea culpa! Rich -- Richard B. Shepard, Ph.D. | The Environmental Permitting Applied Ecosystem Services, Inc.(TM) | Accelerator <http://www.appl-ecosys.com> Voice: 503-667-4517 Fax: 503-667-8863 |
From: Markus H. <mar...@mh...> - 2006-07-10 21:39:55
|
Hi Rich, Rich Shepard writes: > I must be missing something important here. I use emacs with refdb-mode > and add a new framework with ctrl-s-s and a new tag with ctrl-s-t. What have > I overlooked? > :-) These commands are part of ris-mode, which is the major mode to edit RIS files. ris-mode has had keybindings for a while. refdb-mode is a minor mode to interact with a RefDB server. So far you could work with refdb-mode (add/update/delete datasets, run queries, cite references, create and transform markup documents and so on) only through the menu interface or by issuing the commands in the minibuffer. Now you can do many of these tasks through keyboard shortcuts. E.g. try Ctrl-c Ctrl-r x a which will prompt you for a regular expression (get reference by author). To see all keybindings, use Ctrl-h b while refdb-mode is active, or peek into the refdb-mode manual. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Rich S. <rsh...@ap...> - 2006-07-10 21:15:03
|
On Sun, 9 Jul 2006, Markus Hoenicka wrote: > I've defined keybindings for the most common commands of refdb-mode in > order to make the mode usable from the keyboard. Markus, I must be missing something important here. I use emacs with refdb-mode and add a new framework with ctrl-s-s and a new tag with ctrl-s-t. What have I overlooked? Thanks, Rich -- Richard B. Shepard, Ph.D. | The Environmental Permitting Applied Ecosystem Services, Inc.(TM) | Accelerator <http://www.appl-ecosys.com> Voice: 503-667-4517 Fax: 503-667-8863 |
From: Markus H. <mar...@mh...> - 2006-07-10 20:10:37
|
Hi David, David Nebauer writes: > I have encountered two problems building from svn source -- if I'm > missing something bleeding obvious please point it out. I've added the missing stylesheet to svn. I've checked out a fresh copy from svn, and it builds on my FreeBSD box without a hitch. > david@hezmana:temp$ make > make: *** No rule to make target `refdb-mode.texi', needed by > `refdb-mode.info'. Stop. > david@hezmana:temp$ If this problem persists on your box, could you please send me the Makefiles (Makefile, Makefile.in) that the autotools and configure create? I'd like to check where the refdb-mode.texi target gets lost. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Markus H. <mar...@mh...> - 2006-07-10 14:11:18
|
Dominik Reusser <dre...@un...> was heard to say: > I just installed the .deb version 0.9.7-pre7-3 of refdb. Calling bib2ris does > not read my $HOME/.bib2risrc as expected. If I'm using the configuration file > below, abstracts and so on are not included in the new ris file. Any > suggestions what I'm doing wrong? > > > $ cat ~/.bib2risrc > nfs_abstract N2 > nfs_url UR > nfs_pdf AV > nfs_keywords KW > nfs_citedreferences U1 > nfs_owner U2 These variables are simply misspelled. Change these to nsf_whatever (as in Non Standard Fields) and things should work better. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Dominik R. <dre...@un...> - 2006-07-10 13:21:59
|
I just installed the .deb version 0.9.7-pre7-3 of refdb. Calling bib2ris do= es=20 not read my $HOME/.bib2risrc as expected. If I'm using the configuration fi= le=20 below, abstracts and so on are not included in the new ris file. Any=20 suggestions what I'm doing wrong? $ cat ~/.bib2risrc nfs_abstract N2 nfs_url UR nfs_pdf AV nfs_keywords KW nfs_citedreferences U1 nfs_owner U2 Thanks Dominik Reusser =2D-=20 Dominik Reusser Universit=E4t Potsdam Institut f=FCr Geo=F6kologie Postfach 60 15 53 14415 Potsdam Tel: 0331 977 21 11 =46ax: 0331 977 20 92 http://www.uni-potsdam.de/u/Geooekologie/index.html |
From: Markus H. <mar...@mh...> - 2006-07-10 10:35:05
|
Hi David, David Nebauer <dav...@sw...> was heard to say: > I have encountered two problems building from svn source -- if I'm > missing something bleeding obvious please point it out. > No, I don't think so. It looks like I'll never get it right at the first attempt. > Here is the first attempt which fails due to a missing 'refdb-mode.texi' > (blank lines added for clarity): > The refdb-mode.texi hack is explained in the autogen.sh file. The autotools want this file to be around in the first place if I use the automatic installation support for this kind of documentation. However, I use docbook2texi to generate this file from the same sources as the PDF manual. Therefore I have to create a mock texi file for the autotools and remove it later. Otherwise it would be newer than the DocBook sources and it would not be rebuilt. > david@hezmana:temp$ make > make: *** No rule to make target `refdb-mode.texi', needed by > `refdb-mode.info'. Stop. > david@hezmana:temp$ > This is a bit strange as the last rule in Makefile.am is the rule to make the target refdb-mode.texi. I don't get this error on FreeBSD and on Cygwin. Both use GNU make. > xsltproc --param fop.extensions 1 --stringparam funcsynopsis.style ansi > "manual-fo.xsl" refdb-mode-manual.xml > refdb-mode-manual.fo > warning: failed to load external entity "manual-fo.xsl" > cannot parse manual-fo.xsl > make: *** [refdb-mode-manual.pdf] Error 4 > david@hezmana:temp$ > > Preventing the deletion of 'refdb-mode.texi' enables the build process > to proceed. Now the problem seems to be a missing 'manual-fo.xsl'. I > note the previous revision of the makefile used the standard docbook fo > stylesheet. Perhaps you forgot to include 'manual-fo.xsl' in svn when > you altered the xsltproc command? > Yes, this is obviously the case. I'll fix that tonight. > By the way, the default 'xsltproc' output is paper type 'USletter'. > This is a non-standard paper size used primarily in the US. I'd suggest > A4 paper size, especially for an internationally distributed > application. If you want to produce the PDF manual in this paper size > add the following parameter to the relevant 'xsltproc' command: > --stringparam paper.type A4 > > IIRC, the main refdb documentation also produces 'USletter' sized PDF > output. The German DIN ("German industry norm") paper size system (now an ISO standard) is a surprisingly well-thought-out engineering feat indeed (see below for an example). I've created the docs in letter size out of an old habit that you can print letter size documents on both letter and A4 paper without losing the page numbers or the running heads while the reverse doesn't always work. However, at least Acrobat Reader allows to resize the pages appropriately which would allow to use A4 documents regardless. What is the situation with the free PDF viewers? Do they allow to resize the pages? regards, Markus The DIN paper size system allows you to pull nice tricks like this one: how many sheets of A4 paper using standard printer paper of 80g/sqm can you send with the standard postage valid for letters up to 20g? An A0 sheet of this quality weighs 80g, as its size is defined as a sheet of 1 square meter with an aspect ratio of sqrt(2) (approx. 1.41). The area of an A4 paper is thus 2^4 times smaller (going from A0 to A4 is 4 steps with half the area per step), resulting in 80g/16=5g per sheet. You can stuff 4 of these sheets into a B6 envelope (folding the paper once in half gives A5 which fits into B5 envelopes. Folding once more results in B6), assuming the scales allow some extra weight for the envelope. Use 3 sheets to be on the safe side. Now if you try this with US paper sizes, you have to know or measure the paper dimensions of letter or legal paper in order to compute its weight. Then you're still presented with the problem of fitting one of these paper sizes into an envelope whose dimensions are not related to the paper size in any logical way, making at least basic origami skills a prerequisite for sending mail. It is not much of a surprise that email was picked up most rapidly in the US. -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Markus H. <mar...@mh...> - 2006-07-10 08:13:24
|
Hi all, I've compiled a binary package of RefDB 0.9.7 for Cygwin. The package is available at the SourceForge download page: http://sourceforge.net/project/showfiles.php?group_id=26091 Please remember that this is not a "real" Cygwin package. It is a simple tar.gz archive which you should extract in "/" as an administrator. Everything will be installed in the /usr/local hierarchy. After uncompressing the files, please follow the instructions in the manual to set up your main database, a reference database, and database users. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Markus H. <mar...@mh...> - 2006-07-09 18:20:45
|
Hi, I've defined keybindings for the most common commands of refdb-mode in order to make the mode usable from the keyboard. It is always hard to find key combinations that do not conflict with something else. I think I managed to steer clear of any key combos used in nxml-mode or PSGML. There is one clash with AucTeX though but I consider this a minor tradeoff. I've also added citation support for LaTeX documents. You can now create citations in LaTeX format and yank them into your document. You can also go the reverse way and look up references cited in your document. I'd like to ask everyone who's interested to check out the module from Subversion and give it a try (you can get away with retrieving refdb-mode.el through the web interface). I'll release a new version soon unless someone bumps into problems. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Markus H. <mar...@mh...> - 2006-07-09 14:20:10
|
Daniel O'Donnell writes: > You could presumably do this in refdb by creating different users each > with a personal list. But is there a native way to doing multiple > personal lists without creating extra users? > There is no such thing currently. But the required changes to implement this seem rather small. The pickref command would have to associate references with named lists instead of with the username. I'll have a look at the code to get an estimate of how much I'd have to change to support this. In any case, if there is a demand, I'll be happy to implement this. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |
From: Markus H. <mar...@mh...> - 2006-07-09 14:15:45
|
Daniel O'Donnell writes: > On my new server, refdb.domain.tld invokes index.html, but I am unable > to connect to any dbases; domain.tld/refdb gets a 404 error. I've I'm not sure whether it's such a minor problem, but I have to invoke http://localhost/refdb/ in order to get the index page. Note the trailing slash. Without it I get nowhere. regards, Markus -- Markus Hoenicka mar...@ca... (Spam-protected email: replace the quadrupeds with "mhoenicka") http://www.mhoenicka.de |