|
From: Sergio R. C. <sru...@gm...> - 2023-12-16 07:17:09
|
Hi Andriy, Please refer to https://github.com/CBDD/rDock, as the project has been ported to GitHub and the installation steps modified. Hope that helps. Thanks, Sergio On Sat, 16 Dec 2023 at 18:06, Andriy Kovalenko <an...@ua...> wrote: > Hello, > > I downloaded and started installing rDock on my Ubuntu desktop. > Unfortunately, it interrupted with an error message - please see (1) > below, highlighted in bold. > > Due to message (1), I then started installing *lpopt*. > However, it ended up again with an error message - please see (2) below, > highlighted in bold. > > Would you please help me out to resolve this issue. > > Sincerely, > > > Dr. Andriy Kovalenko > > Research Assistant > Department of Biological Sciences > University of Alberta > CW 405, Biological Sciences Bldg. > Edmonton, Alberta, Canada T6G 2E9 > > Tel: 780-940-7477 (cell) > e-mail: and...@ua... > > > (1) andriy@andriy-Precision-Tower-5810:~/rDock-main$ *sudo make install* > make lib > make[1]: Entering directory '/home/andriy/rDock-main' > g++ -Werror -pipe -std=c++14 -fPIC -O3 -ffast-math -D_NDEBUG -shared > -L./lib obj/RbtTriposAtomType.o obj/RbtMdlFileSink.o > obj/RbtBaseMolecularFileSink.o obj/RbtPdbFileSource.o obj/RbtBaseIntraSF.o > obj/RbtFilter.o obj/RbtSubject.o obj/RbtEuler.o obj/RbtPMFDirSource.o > obj/RbtPrincipalAxes.o obj/RbtCellTokenIter.o obj/RbtDihedralTargetSF.o > obj/RbtGATransform.o obj/RbtChromDihedralRefData.o > obj/RbtBaseMolecularFileSource.o obj/RbtRotSF.o obj/RbtFlexAtomFactory.o > obj/RbtNullTransform.o obj/RbtChrom.o obj/RbtSFAgg.o obj/RbtBond.o > obj/RbtBiMolWorkSpace.o obj/RbtAtomFuncs.o obj/RbtNonBondedGrid.o > obj/RbtChromPositionRefData.o obj/RbtAlignTransform.o > obj/RbtSiteMapperFactory.o obj/RbtObserver.o obj/RbtModelMutator.o > obj/RbtPsfFileSource.o obj/RbtAromIdxSF.o obj/RbtPolarSF.o > obj/RbtBaseTransform.o obj/RbtBaseBiMolTransform.o obj/RbtSetupPolarSF.o > obj/RbtDirectorySource.o obj/RbtPopulation.o obj/RbtCavityFillSF.o > obj/RbtBaseUniMolTransform.o obj/RbtFilterExpressionVisitor.o > obj/RbtCharmmTypesFileSource.o obj/RbtConstraint.o obj/RbtMOEGrid.o > obj/RbtChromFactory.o obj/RbtMOL2FileSource.o obj/RbtNonBondedHHSGrid.o > obj/RbtChromOccupancyElement.o obj/RbtChromElement.o > obj/RbtChromPositionElement.o obj/RbtAtom.o obj/RbtTransformAgg.o > obj/RbtCavityGridSF.o obj/RbtRandLigTransform.o obj/RbtModel.o > obj/RbtCrdFileSource.o obj/RbtAnnotation.o obj/RbtDihedralSF.o > obj/RbtSimplexTransform.o obj/RbtParser.o obj/RbtDebug.o obj/RbtPMFIdxSF.o > obj/RbtElementFileSource.o obj/RbtLigandSiteMapper.o obj/RbtVdwIntraSF.o > obj/RbtLigandFlexData.o obj/RbtAnnotationHandler.o obj/RbtPseudoAtom.o > obj/RbtBaseObject.o obj/RbtRandPopTransform.o obj/RbtSetupPMFSF.o > obj/RbtSolventFlexData.o obj/RbtRealGrid.o obj/RbtReceptorFlexData.o > obj/RbtSFFactory.o obj/RbtChromDihedralElement.o obj/RbtSetupSASF.o > obj/RbtNoeRestraint.o obj/RbtPsfFileSink.o obj/RbtSiteMapper.o > obj/RbtPolarIntraSF.o obj/RbtSATypes.o obj/RbtBaseGrid.o obj/RbtWorkSpace.o > obj/RbtToken.o obj/RbtSphereSiteMapper.o obj/RbtBaseIdxSF.o > obj/RbtVdwGridSF.o obj/RbtSimAnnTransform.o obj/RbtContext.o > obj/RbtPRMFactory.o obj/RbtChromOccupancyRefData.o obj/RbtVdwIdxSF.o > obj/RbtBaseFileSink.o obj/RbtInteractionGrid.o obj/RbtDihedralIntraSF.o > obj/RbtPharmaSF.o obj/RbtPMFGridSF.o obj/RbtDockingSite.o > obj/RbtNmrRestraintFileSource.o obj/RbtRand.o obj/RbtVdwSF.o > obj/RbtCharmmDataSource.o obj/RbtTransformFactory.o obj/RbtBaseFileSource.o > obj/Rbt.o obj/RbtPMF.o obj/RbtMdlFileSource.o obj/RbtParamHandler.o > obj/RbtParameterFileSource.o obj/RbtFFTGrid.o obj/RbtNmrSF.o > obj/RbtPolarIdxSF.o obj/RbtCrdFileSink.o obj/RbtBaseSF.o > obj/RbtBaseInterSF.o obj/RbtTetherSF.o obj/RbtStringTokenIter.o > obj/RbtFilterExpression.o obj/RbtGenome.o obj/RbtConstSF.o obj/RbtSAIdxSF.o > obj/simplex/NMSearch.o obj/GP/RbtGPChromosome.o obj/GP/RbtGPGenome.o > obj/GP/RbtGPParser.o obj/GP/RbtGPFFGold.o obj/GP/RbtGPFFSpike.o > obj/GP/RbtGPFitnessFunction.o obj/GP/RbtGPPopulation.o > obj/GP/RbtGPFFCrossDock.o obj/GP/RbtGPFFCHK1.o obj/GP/RbtGPFFHSP90.o -o > lib/libRbt.so -lpopt -lm -lstdc++ > > > > > > */usr/bin/ld: cannot find -lpopt: No such file or directorycollect2: > error: ld returned 1 exit statusmake[1]: *** [Makefile:190: lib/libRbt.so] > Error 1make[1]: Leaving directory '/home/andriy/rDock-main'make: *** > [Makefile:133: build_lib] Error 2* > > (2) andriy@andriy-Precision-Tower-5810:~/Ipopt$ ./configure > CXX=g++-11.4.0 CC=gcc-11.4.0 F77=gfortran-11.4.0 > checking build system type... x86_64-pc-linux-gnu > checking host system type... x86_64-pc-linux-gnu > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a race-free mkdir -p... /usr/bin/mkdir -p > checking for gawk... no > checking for mawk... mawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether to enable maintainer-specific portions of Makefiles... no > checking whether make supports the include directive... yes (GNU style) > checking whether the C compiler works... no > > > *configure: error: in `/home/andriy/Ipopt':configure: error: C compiler > cannot create executables*See `config.log' for more details > > > _______________________________________________ > rDock-list-def mailing list > rDo...@li... > https://lists.sourceforge.net/lists/listinfo/rdock-list-def > |