From: Jose M. G. <jos...@un...> - 2016-04-06 13:24:38
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Dear rDock community, I would like to dock some sulfonamides, but noticed they all get a very high score. By reading the $RBT_ROOT/data/sf/Tripos52_dihedrals.prm file, I saw that sulfonamides were actually currently not supported. I would like to modify the force field to add them. How would you recommand I do that? As an extra question, I noticed that the intramolecular score does not take into account interatomic distances, so unlikely conformers can still get a good score. Is it possible to consider them while assessing pose scores? Thank you in advance for your replies and have a very nice day. Cheers, Jose Manuel |