Re: [rDock-list-def] Visualizing cavities

[Marko K. <gen...@gm...>]

Hi Szilva,

I think you can only visualize the .grd files outputted by rbcavity with
'-d' flag, not the distance grid stored is .as files. The former seem to
open natively with InsightII, but for a free alternative, personally, I'm
quite happy with what Chimera displays with the help of a small script one
of the developers made in response to a request related to yours. Check out:
http://www.cgl.ucsf.edu/pipermail/chimera-users/2014-February/009646.html

Marko


On Wed, May 14, 2014 at 3:45 PM, Szilveszter Juhos
<szi...@gm...>wrote:

> Hi All,
>
> Is there an easy way of visualizing the cavities (*.as) crated by
> rbcavity? Tried to run the rDock GUI from the York webpage but got
> only NPE when trying to run.
>
> Cheers:
> Szilva
>
>
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