[Rdkit-discuss] (no subject)
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[Rdkit-discuss] (no subject)
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From: <che...@gm...> - 2013-10-21 14:58:38
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<html><head></head><body><div style="font-family: Verdana;font-size: 12.0px;"><div> </div> <div class="signature"> <div>Hi,</div> <div>I am a medicinal chemist and am using RDKit and the Postgresql cartridge with much success in a small startup project as the backbone for the chemical / biological database and for cheminformatics (Lipinski and such, substructure and similarity searches, ...).<br/> I have just upgraded from RDKit_2013_03_2.tgz to RDKit_2013_06_1.tgz on Arch Linux (but using bison 2.7) and as far as I can tell, the upgrade was ok, rdkit is working fine in IPython.<br/> But in postgresql, I now get this error:</div> <div> psql (9.2.4)</div> <div> db=# select cpd_no, mol_to_smiles(mol) as smiles, lab_code from chem_cpd, chem_batch<br/> where cpd_pk = 150 and cpd_pk = cpd_fk;<br/> ERROR: could not load library "/usr/lib/postgresql/rdkit.so": /usr/lib/postgresql/rdkit.so: undefined symbol: palloc<br/> db=#</div> <div>I have rebuilt the cartridge of the new version, of course.</div> <div>Do you have any ideas what might cause this error ?</div> <div>Many thanks in advance,<br/> Axel</div> </div></div></body></html> |
