[Rdkit-discuss] problem with overlap in drawing.

[Adrian J. <jas...@gm...>]

Hi All

I have some problem with drawing. When I draw molecules using RDkit
sometimes I have some structure overlap.
But when I draw it using for example marvin it's look fine.

There is some example code:

from rdkit import Chem
from rdkit.Chem import Draw
mol = Chem.MolFromSmiles('CC(=O)Nc1ccccc1C(=O)C1CCCC1C1CCCCC1')
Draw.MolToFile(mol,'test.png')

In attachment I added example image.

I'm using Ubuntu 12.04 x64.

Is there any solution?