RawGeno Activity
Status: Alpha
Brought to you by:
arrigon
Activity for RawGeno
-
Sneha Joshi posted a comment on discussion Help
I have generated 10 binalry tables for various AFLP primer pairs. But while merging tese tables (by following the steps mentioned in the manual), I am constantly getting following error message Error in .Tcl.args.objv(...) : object 'tt' not found Error in data.frame(finalmat, mat) : row names contain missing values In addition: Warning message: In [<-.factor(*tmp*, ri, value = 0) : invalid factor level, NA generated Can anyone please help me with this?
-
I am using peakscanner .txt file to inport the data. But when hit "scoring" () following message flashes "Error in paste(floor(min(AFLP$all.dat$Size))) : object 'AFLP' not found" and I get blank "Aggregate AFLP bands" window Can you please help me with this?
-
Kayla Dias posted a comment on discussion Help
Hi Markus, would you be able to guide me through how you did this? I'm having issues loding the output files from PeakScanner and GeneMarker (v 3.0) into RawGeno. Appreciate your help!
-
How can I get RawGeno v2.0 to work with R ver 3.3.3. I am getting the following error message: "Failed with error: ‘package ‘RawGeno’ was built before R 3.0.0: please re-install it’"
-
Markus Ruhsam posted a comment on discussion Help
I just noticed that I can select the columns which I want included in the peak table so can customise it as needed by RawGeno. Sorry about this. Markus
-
Hello, I am using the latest version of Genemarker (v2.7) and the allele table has a somewhat different format to the one of previous versions (copied below, sorry attaching a screenshot didn't work). So no surprise that RawGeno through up an error when trying to import the data. Is there any way to resolve this issue or update RawGeno to accept the newer table format ? Thank you Markus! Peak Table Software Package: SoftGenetics GeneMarker 2.7.0 Date/Time: 05/02/2018 - 11:59:28 Project: Z:\My Documents\LAB\LAB...
-
Nils Arrigo posted a comment on discussion Help
Dear Jade, The error rate is defined as Eb = Mrepl/nbin, where Mrepl is the total...
-
Jade Phillips posted a comment on discussion Help
Hello, I am currently using RawGeno to analyse AFLP results for my PhD project. I...
-
Hi Wojciech, Sorry for the unconvenience; I had actually forgotten about having inactivated...
-
Hi Wojciech, Sorry for the unconvenience; I had actually forgotten about having inactivated...
-
Wojciech modified a comment on discussion Help
Dear Nils, I spent lately some days in vain trying to guess what I do wrong with...
-
Dear Nils, I spent lately some days in vain trying to guess what I do wrong with...
-
Ivan posted a comment on discussion Help
Hello. I'm using RawGeno in linux and I can't load de PeakScanner output table made...
-
Ivan Mendez posted a comment on discussion Help
Well, i already have a complete matrix with missing data coded as NA, nevertheles...
-
Thanks, It´s working now!
-
There it goes! # 1. Load packages, as usual. require(RawGeno) require(vegan) # 2....
-
Hi Kathrin, You seem to have hit on something new... Could you send me the faulty...
-
Kathrin Nägele posted a comment on discussion Help
Somehow PeakScanner seems to have a problem with one particular dataset I'm trying...
-
Hi, i´ve been trying to merge eight matrix that contain different number of individuals...
1
