[Pytables-users] problems finding lzo and ucl

[Ken D. <kd...@gm...>]

I am trying to install pytables 1.2.3 and am having problems 
with lzo and ucl

I have installed numarray-1.5.1, numeric 24.2, lzo2.02 and 
ucl-1.03 (the latter two with the usual configure, make, 
make install)
I installed lzo under /usr but ucl under /usr/local

in /usr/lib, I have
	liblzo2.a  liblzo2.la  liblzo2.so  liblzo2.so.2 
liblzo2.so.2.0.0
in /usr/include, I have
	lzo1.h  lzo1a.h  lzo1b.h  lzo1c.h  lzo1f.h  lzo1x.h 
lzo1y.h  lzo1z.h  lzo2a.h  lzo_asm.h  lzoconf.h  lzodefs.h 
lzoutil.h

in /usr/local/lib, I have
	libucl.a   libucl.la
in /usr/local/include/ucl, I have
	ucl.h  ucl_asm.h  uclconf.h

I am running Suse 9.0 and python 2.4.1

Trying to install pytables, I get the following

# python setup.py install
* Found numarray 1.5.1 package installed.
* Found HDF5 headers at ``/usr/local/include``, library at 
``/usr/local/lib``.
* Found LZO 2 headers at ``/usr/include``, library at 
``/usr/lib``.
* Skipping detection of LZO 1 since LZO 2 has already been 
found.
* Found UCL headers at ``/usr/include``, library at 
``/usr/lib``.
.. WARNING:: Could not find the UCL runtime.
    The UCL shared library was *not* found in the default 
library
    paths. In case of runtime problems, please remember to 
install it.
* Found bzip2 headers at ``/usr/include``, library at 
``/usr/lib``.


python test_all.py
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version:  1.2.3
HDF5 version:      1.6.5
numarray version:  1.5.1
Zlib version:      1.1.4
UCL version:       1.03 (Jul 20 2004)
BZIP2 version:     1.0.2 (30-Dec-2001)
Python version:    2.4.1 (#5, Sep  6 2005, 15:09:29)
[GCC 3.3.1 (SuSE Linux)]
Platform:          linux2-i686
Byte-ordering:     little
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Performing only a light (yet comprehensive) subset of the test
suite.  If you have a big system and lots of CPU to waste 
and want to
do a more complete test, try passing the --heavy flag to 
this script.
The whole suite will take more than 10 minutes to complete on a
relatively modern CPU and around 100 MB of main memory.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Numeric (version 24.2) is present. Adding the Numeric test 
suite.
Scientific.IO.NetCDF not found. Skipping HDF5 <--> NetCDF 
conversion tests.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
/usr/lib/python2.4/site-packages/tables/Leaf.py:98: 
UserWarning: lzo compression library is not available. Using 
zlib instead!.
   warnings.warn( \
.......bunch of 
dots.............................................
----------------------------------------------------------------------
Ran 2246 tests in 132.042s

OK
---------

I have tried various ways to specify the location of lzo but 
that hasn't worked.

Any advice would be appreciated

Ken Dere

-- 
_______________________
Ken Dere
Research Professor of Solar Physics
MS 5C3
School of Computational Sciences
George Mason University
4400 University Drive
Fairfax VA 22030
703-993-4555
703-993-1993 (FAX)
kd...@gm...