[Pytables-users] [ubuntu install] libhdf5.so.0: cannot open. tables-2.2b3

[Francesc A. <fa...@py...>]

[Yet another message from unsubscribed address.  Darek, please subscribe to 
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----------------------------------------------------------------------------
De: Darek Kedra <dar...@gm...>
A: pyt...@li...
Data: Ahir 19:16:33
   
Hello,

I am on Ubuntu 9.10 with a mix of libraries installed from distro deb
files (via Synaptic) and crucial libs compiled from source.
I got:

* HDF5-1.6.10, 5-1.6.10-linux-x86_64-shared.tar.gz
from: http://www.hdfgroup.org/HDF5/release/obtain516.html

(unpacked, moved to /usr/local/share and linked everything to
/usr/local/lib  /usr/local/include and  /usr/local/bin from respective
dirs of
/usr/local/share/hdf5-1.6.10_x86_64_shared

run h5redeploy to fix location of libs etc.


* szip-2.1.tar.gz
from http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/

compiled and installed it in /usr/local

* got lzop (via Synaptic):

dpkg --get-selections | grep lzo
liblzo2-2                                       install
liblzo2-dev                                     install
lzop                                            install


* pytables-2.2b3$
 python setup.py build_ext --inplace
* Found numpy 1.3.0 package installed.
* Found HDF5 headers at ``/usr/local/include``, library at ``/usr/local/lib``.
* Found LZO 2 headers at ``/usr/include``, library at ``/usr/lib64``.
* Skipping detection of LZO 1 since LZO 2 has already been found.
* Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``
<snip>
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions
build/temp.linux-x86_64-2.6/tables/linkExtension.o -lhdf5 -o
/home/darked/Desktop/00_genome_DB_soft/tables-2.2b3/tables/linkExtension.so

So no errors at this stage.
python
>>import tables
 <snip>
 ImportError: libhdf5.so.0: cannot open shared object file: No such
file or directory


I will very much appreciate your ideas how to fix this.

Thank you,

Darek Kedra