From: Serge C. <co...@em...> - 2002-10-02 14:10:44
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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Title says it all... Is it possible to draw a protein (back-bone, cartoon, sticks...) with a colouring scheme according to the crystallographic B-factor of each atoms? Thanks for the help Serge. PS: If any one as some info on the previous questions I asked (get_view blocks...), really don't fill shy about it. I did not have any answer (even off list) - ---------------------------------------------------- Serge Cohen GPG Key ID: 1024D/69B1D346 - ---------------------------------------------------- -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.7 (Darwin) iD8DBQE9mv5FMygj1Wmx00YRAv+CAJ4zTpe8DPLwhXF8b5IDpCsSAQwZpgCggsfd 69I1HGciE849hCzxpv69aGo= =vdj3 -----END PGP SIGNATURE----- |
From: Robert C. <rl...@k2...> - 2002-10-02 14:41:43
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Serge, * Serge Cohen <co...@em...> [2002-10-02 16:10] wrote: > Title says it all... >=20 > Is it possible to draw a protein (back-bone, cartoon, sticks...) with a= =20 > colouring scheme according to the crystallographic B-factor of each=20 > atoms? I have a color_b.py python script on my PyMOL web page that you can use. it has a number of options including the selection and two types of colouring schemes (rainbow versus a blue-magenta-red gradient) and two types of binning of the colours (equal number of atoms in each colour or equal spacing of colours along the B-factor range). See http://biophysics.med.jhmi.edu/rlc/work/pymol to download. There are other scripts there as well. Cheers, Robert --=20 Robert L. Campbell, Ph.D. http://biophysics.med.jhmi.edu/rlc rl...@k2... phone: 410-614-6313 Research Specialist/X-ray Facility Manager HHMI/Dept. of Biophysics & Biophysical Chem., The Johns Hopkins University PGP Fingerprint: 9B49 3D3F A489 05DC B35C 8E33 F238 A8F5 F635 C0E2 |