Re: [PyMOL] Colouring according to B-factor

[Robert C. <rl...@k2...>]

Serge,

* Serge Cohen <co...@em...> [2002-10-02 16:10] wrote:
> Title says it all...
>=20
> Is it possible to draw a protein (back-bone, cartoon, sticks...) with a=
=20
> colouring scheme according to the crystallographic B-factor of each=20
> atoms?

I have a color_b.py python script on my PyMOL web page that you can use.
it has a number of options including the selection and two types of
colouring schemes (rainbow versus a blue-magenta-red gradient) and
two types of binning of the colours (equal number of atoms in each
colour or equal spacing of colours along the B-factor range).

See http://biophysics.med.jhmi.edu/rlc/work/pymol to download.
There are other scripts there as well.

Cheers,
Robert
--=20
Robert L. Campbell, Ph.D.               http://biophysics.med.jhmi.edu/rlc
rl...@k2...                                    phone: 410-614-6313
Research Specialist/X-ray Facility Manager
HHMI/Dept. of Biophysics & Biophysical Chem., The Johns Hopkins University
    PGP Fingerprint: 9B49 3D3F A489 05DC B35C  8E33 F238 A8F5 F635 C0E2