pymol-users — Collaborative support and tips for PyMOL users

Re: [PyMOL] Question about glm in pymol

[Jarrett J. <jar...@sc...>]

Hi,

Your version of glm (default with Centos7 with yum) should now work. I
committed a change to fix this compiler error about twelve hours ago. You
just need to pull the latest changes.

Best,

Jarrett J.

On Tue, Jul 12, 2022 at 10:24 PM 张敏华 <mhz...@si...> wrote:

> Dear Jarrett Johnson：
>         In fact I encountered an error message when I am installing the
> latest version of pymol.  First I installed all the library that needed
> according the pymolwiki by yum.  Then during the installation process, an
> error message appeared:
>
>        “ layer0/TTT.cpp:87:27: error: no match for ‘operator=’ (operand
> types are ‘glm::vec3 {aka glm::tvec3<float, (glm::precision)0u>}’ and
> ‘glm::tmat4x4<float, (glm::precision)0u>::col_type {aka glm::tvec4<float,
> (glm::precision)0u>}’)
>
>    result.m_pretranslation = mult[3];
>
>          <other  outputs>
>
>         error:  command 'g++’failed with exit status 1”
>
>        So I guess there might be something wrong with glm, but I don't
> know how to solve it. Maybe the glm version installed by yum in CentOS7 is
> not the latest version? I searched the google and some threads suggests
> that should use the glm-0.9.9 instead yum installed glm-0.9.6. Then how to
> use the glm-0.9.9?
>
>
>
> ------------------------------
> Minhua Zhang, Ph.D., Assistant Professor
> Structural Biology Lab
> Institute of Plant Physiology and Ecology, Shanghai Institute of
> Biological Sciences
> Chinese Academy of Sciences
> 300 Fenglin Road, Shanghai, 20032, P.R.China
> Tel:  86 21 5492 4218
> Fax:  86 21 5492 4015
> Email: mh...@si...
>
>
> *From:* Jarrett Johnson <jar...@sc...>
> *Date:* 2022-07-13 00:33
> *To:* 张敏华 <mhz...@si...>
> *CC:* pymol-users <pym...@li...>
> *Subject:* Re: [PyMOL] Question about glm in pymol
> Hello,
>
> Through CentOS, you should be able to install glm with yum package manager.
>
> yum install glm-devel
>
> More info can be found here: https://pymolwiki.org/index.php/Linux_Install
> .
>
> Also take note that if you're using Centos 7, the default glm may not have
> a modern enough API for PyMOL code. I updated the codebase today which
> should make it compatible with this version of glm. Make sure to pull again
> if that's the case for you.
>
> Best,
> Jarrett J
>
> On Tue, Jul 12, 2022 at 12:26 PM 张敏华 <mhz...@si...> wrote:
>
>> Dear all:
>>         I want to comple open-source-pymol in CentOS. So I want to using
>> the latest glm. So how to install glm? or  I just put the glm folder into
>> the include folder in the open-sourde-pymol folder?
>>
>> ------------------------------
>> Minhua Zhang, Ph.D., Assistant Professor
>> Structural Biology Lab
>> Institute of Plant Physiology and Ecology, Shanghai Institute of
>> Biological Sciences
>> Chinese Academy of Sciences
>> 300 Fenglin Road, Shanghai, 20032, P.R.China
>> Tel:  86 21 5492 4218
>> Fax:  86 21 5492 4015
>> Email: mh...@si...
>> _______________________________________________
>> PyMOL-users mailing list
>> Archives: http://www.mail-archive.com/pym...@li...
>> Unsubscribe:
>> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
>
>
>
> --
>
> *Jarrett Johnson* | Senior Developer, PyMOL
>
>

-- 

*Jarrett Johnson* | Senior Developer, PyMOL

Re: [PyMOL] Question about glm in pymol

[张敏华 <mhz...@si...>]

Dear Jarrett Johnson：
        In fact I encountered an error message when I am installing the latest version of pymol.  First I installed all the library that needed according the pymolwiki by yum.  Then during the installation process, an error message appeared:
  
       “ layer0/TTT.cpp:87:27: error: no match for ‘operator=’ (operand types are ‘glm::vec3 {aka glm::tvec3<float, (glm::precision)0u>}’ and ‘glm::tmat4x4<float, (glm::precision)0u>::col_type {aka glm::tvec4<float, (glm::precision)0u>}’)
   result.m_pretranslation = mult[3];

         <other  outputs>

        error:  command 'g++’failed with exit status 1”

       So I guess there might be something wrong with glm, but I don't know how to solve it. Maybe the glm version installed by yum in CentOS7 is not the latest version? I searched the google and some threads suggests that should use the glm-0.9.9 instead yum installed glm-0.9.6. Then how to use the glm-0.9.9? 





Minhua Zhang, Ph.D., Assistant Professor
Structural Biology Lab
Institute of Plant Physiology and Ecology, Shanghai Institute of Biological Sciences
Chinese Academy of Sciences
300 Fenglin Road, Shanghai, 20032, P.R.China
Tel:  86 21 5492 4218
Fax:  86 21 5492 4015 
Email: mh...@si...
 
From: Jarrett Johnson
Date: 2022-07-13 00:33
To: 张敏华
CC: pymol-users
Subject: Re: [PyMOL] Question about glm in pymol
Hello,

Through CentOS, you should be able to install glm with yum package manager.

yum install glm-devel

More info can be found here: https://pymolwiki.org/index.php/Linux_Install .

Also take note that if you're using Centos 7, the default glm may not have a modern enough API for PyMOL code. I updated the codebase today which should make it compatible with this version of glm. Make sure to pull again if that's the case for you. 

Best,
Jarrett J

On Tue, Jul 12, 2022 at 12:26 PM 张敏华 <mhz...@si...> wrote:
Dear all:
        I want to comple open-source-pymol in CentOS. So I want to using the latest glm. So how to install glm? or  I just put the glm folder into the include folder in the open-sourde-pymol folder?



Minhua Zhang, Ph.D., Assistant Professor
Structural Biology Lab
Institute of Plant Physiology and Ecology, Shanghai Institute of Biological Sciences
Chinese Academy of Sciences
300 Fenglin Road, Shanghai, 20032, P.R.China
Tel:  86 21 5492 4218
Fax:  86 21 5492 4015 
Email: mh...@si...
_______________________________________________
PyMOL-users mailing list
Archives: http://www.mail-archive.com/pym...@li...
Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe


-- 
Jarrett Johnson | Senior Developer, PyMOL

Re: [PyMOL] Question about glm in pymol

[Jarrett J. <jar...@sc...>]

Hello,

Through CentOS, you should be able to install glm with yum package manager.

yum install glm-devel

More info can be found here: https://pymolwiki.org/index.php/Linux_Install .

Also take note that if you're using Centos 7, the default glm may not have
a modern enough API for PyMOL code. I updated the codebase today which
should make it compatible with this version of glm. Make sure to pull again
if that's the case for you.

Best,
Jarrett J

On Tue, Jul 12, 2022 at 12:26 PM 张敏华 <mhz...@si...> wrote:

> Dear all:
>         I want to comple open-source-pymol in CentOS. So I want to using
> the latest glm. So how to install glm? or  I just put the glm folder into
> the include folder in the open-sourde-pymol folder?
>
> ------------------------------
> Minhua Zhang, Ph.D., Assistant Professor
> Structural Biology Lab
> Institute of Plant Physiology and Ecology, Shanghai Institute of
> Biological Sciences
> Chinese Academy of Sciences
> 300 Fenglin Road, Shanghai, 20032, P.R.China
> Tel:  86 21 5492 4218
> Fax:  86 21 5492 4015
> Email: mh...@si...
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe



-- 

*Jarrett Johnson* | Senior Developer, PyMOL

[PyMOL] Question about glm in pymol

[张敏华 <mhz...@si...>]

Dear all:
        I want to comple open-source-pymol in CentOS. So I want to using the latest glm. So how to install glm? or  I just put the glm folder into the include folder in the open-sourde-pymol folder?



Minhua Zhang, Ph.D., Assistant Professor
Structural Biology Lab
Institute of Plant Physiology and Ecology, Shanghai Institute of Biological Sciences
Chinese Academy of Sciences
300 Fenglin Road, Shanghai, 20032, P.R.China
Tel:  86 21 5492 4218
Fax:  86 21 5492 4015 
Email: mh...@si...

Re: [PyMOL] how to use cmd.label command

[Thomas H. <th...@th...>]

The second argument must be a string, so just put quotes around it:
cmd.label('CAs', '"%s%s" % (one_letter[resn],resi)')

This also works:
cmd.label('CAs', 'f"{oneletter}{resi}"')

Cheers,
  Thomas


On Fri, Jul 8, 2022 at 6:09 PM sunyeping via PyMOL-users
<pym...@li...> wrote:
>
> Dear all,
>
> I want to label residues with the resn+resi, and I tried the following command
>
> one_letter ={'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q', \
> 'ASP':'D', 'ASN':'N', 'HIS':'H', 'TRP':'W', 'PHE':'F', 'TYR':'Y',    \
> 'ARG':'R', 'LYS':'K', 'SER':'S', 'THR':'T', 'MET':'M', 'ALA':'A',    \
> 'GLY':'G', 'PRO':'P', 'CYS':'C'}
>
> select CAs, obj & n. CAs
> label CAs, "%s%s" % (one_letter[resn],resi)
>
>
> These work find. However, when I write these in a script and the last two commands are written as:
>
>     cmd.select('CAs', 'obj & n. CAs')
>
>     cmd.label('CAs', "%s%s" % (one_letter[resn],resi))
>
> it gives the following error:
>
>     NameError: name 'resn' is not defined
>
>
> So could anyone tell me how to correctly use the cmd.label command?
>
> Thank you very much in advance
>
>
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe

[PyMOL] How to use cmd.label command

[sunyeping <sun...@al...>]

Dear all, 

I want to label residues with the resn+resi, and I tried the following command

one_letter ={'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q', \
'ASP':'D', 'ASN':'N', 'HIS':'H', 'TRP':'W', 'PHE':'F', 'TYR':'Y',    \
'ARG':'R', 'LYS':'K', 'SER':'S', 'THR':'T', 'MET':'M', 'ALA':'A',    \
'GLY':'G', 'PRO':'P', 'CYS':'C'}

select CAs, obj & n. CAs
label CAs, "%s%s" % (one_letter[resn],resi)

These work find. However, when I write these in a script and the last two commands are written as:
    cmd.select('CAs', 'obj & n. CAs')
    cmd.label('CAs', "%s%s" % (one_letter[resn],resi))
it gives the following error:
 NameError: name 'resn' is not defined

So could anyone tell me how to correctly use the cmd.label command? 
Thank you very much in advance

[PyMOL] how to use cmd.label command

[sunyeping <sun...@al...>]

Dear all, 

I want to label residues with the resn+resi, and I tried the following command

one_letter ={'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q', \
'ASP':'D', 'ASN':'N', 'HIS':'H', 'TRP':'W', 'PHE':'F', 'TYR':'Y',    \
'ARG':'R', 'LYS':'K', 'SER':'S', 'THR':'T', 'MET':'M', 'ALA':'A',    \
'GLY':'G', 'PRO':'P', 'CYS':'C'}

select CAs, obj & n. CAs
label CAs, "%s%s" % (one_letter[resn],resi)

These work find. However, when I write these in a script and the last two commands are written as:
    cmd.select('CAs', 'obj & n. CAs')
    cmd.label('CAs', "%s%s" % (one_letter[resn],resi))
it gives the following error:
 NameError: name 'resn' is not defined

So could anyone tell me how to correctly use the cmd.label command? 
Thank you very much in advance

Re: [PyMOL] Nonsense mutagenesis

[Jared S. <jar...@co...>]

Hi Jevin -

Depending on how far the termination codon mutation is from the end, it may
work to just delete residues from 415 onward.  However, if this would
delete a substantial chunk of the protein, the real structure of the
truncated polypeptide may differ significantly from the crystal structure
of the full protein, so you should definitely proceed with caution when
interpreting any downstream results.

To apply this naive version of the Gln415Ter nonsense mutation, assuming
the model is called "mystructure", the mutation is on chain A, and the
highest residue number on the chain is 999, you can do something like:

    remove mystructure and chain A and resi 415-999

Hope that helps.

Cheers,
Jared



On Thu, Jun 23, 2022 at 11:24 AM Jevin Parmar <jev...@pe...>
wrote:

> Hi there,
>
>
>
> I’m trying to conduct some mutagenesis on a protein, but I have found that
> PyMol only currently does mutagenesis from one amino acid to another. Is
> there a way to conduct mutagenesis for point mutations resulting in a
> termination codon (eg. p.Gln415Ter)?
>
>
>
> Addtionally, I am unsure how to do nucleotide mutagenesis on a PDB file
> that only had an AA sequence. Is there a way to change the amino acid
> sequence to a nucleotide sequence?
>
>
>
> Thank you in advance!
>
>
>
> Jevin Parmar
> _______________________________________________
> PyMOL-users mailing list
> Archives:
> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_pymol-2Dusers-40lists.sourceforge.net&d=DwICAg&c=009klHSCxuh5AI1vNQzSO0KGjl4nbi2Q0M1QLJX9BeE&r=WvSdhOXcgk8Raz-627dE7KhFMSWU151EBdYq9Mqc8-Q&m=Lp0v2MWeQiAdmityDvstHPywf_EEziik-KMDzMXODOy-Siwm4ZcjT5jYaIeTXme5&s=aQa6lmXm_W7E1N3GeLMQrKxgYE8CGgp-iyckmTjkQ6k&e=
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Re: [PyMOL] How to show orientation axis in Pymol

[Jared S. <jar...@co...>]

Hi G.V. -

See also: https://pymolwiki.org/index.php/Axes

Hope that helps.

Cheers,
Jared

On Thu, Jun 23, 2022 at 8:03 PM Florian Nachon <mai...@na...>
wrote:

> Hi,
>
> Quite easy using CGO : https://pymolwiki.org/index.php/Cgo_arrow
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__pymolwiki.org_index.php_Cgo-5Farrow&d=DwMFAg&c=009klHSCxuh5AI1vNQzSO0KGjl4nbi2Q0M1QLJX9BeE&r=WvSdhOXcgk8Raz-627dE7KhFMSWU151EBdYq9Mqc8-Q&m=yk9ou6mOx-XPgl5E7uc65CzMfwSqSZtNUud6ITx5JAQx54rghUdkxhXdwv9aQYX3&s=h30tGj0PxrCUA1b5i2Sxo1b5Mj645mccwesww4KiuoQ&e=>
>
> Florian
>
> On 23 Jun 2022, at 14:40, Gundala Viswanath <gun...@gm...> wrote:
>
> Hi,
>
> Is there a way  to show the orientation axis in Pymol?
> VMD can do this:
>
>
> <Screen Shot 2022-06-23 at 21.37.30.png>
>
> G.V.
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_pymol-2Dusers-40lists.sourceforge.net&d=DwMFAg&c=009klHSCxuh5AI1vNQzSO0KGjl4nbi2Q0M1QLJX9BeE&r=WvSdhOXcgk8Raz-627dE7KhFMSWU151EBdYq9Mqc8-Q&m=yk9ou6mOx-XPgl5E7uc65CzMfwSqSZtNUud6ITx5JAQx54rghUdkxhXdwv9aQYX3&s=umLl2cod8auf5a5pzchSsI2sbbkvpCbUsc_NZve1JSU&e=>
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>
>
>
> _______________________________________________
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> Archives:
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Re: [PyMOL] How to show orientation axis in Pymol

[Florian N. <mai...@na...>]

Hi,

Quite easy using CGO : https://pymolwiki.org/index.php/Cgo_arrow <https://pymolwiki.org/index.php/Cgo_arrow>

Florian

> On 23 Jun 2022, at 14:40, Gundala Viswanath <gun...@gm...> wrote:
> 
> Hi, 
> 
> Is there a way  to show the orientation axis in Pymol?
> VMD can do this:
> 
> 
> <Screen Shot 2022-06-23 at 21.37.30.png>
> 
> G.V.
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe

[PyMOL] How to show orientation axis in Pymol

[Gundala V. <gun...@gm...>]

Hi,

Is there a way  to show the orientation axis in Pymol?
VMD can do this:


[image: Screen Shot 2022-06-23 at 21.37.30.png]

G.V.

[PyMOL] Capping the ends of peptides

[Peter K. <pk...@se...>]

Dear All,

I made a tripeptide of the form gly-X-gly using the Build function. The 
amino end has a single hydrogen on the nitrogen, and the carboxyl end 
has only one oxygen so that additional amino acids could be added to 
it.  How do I make the amino end into an -NH3with a plus charge and the 
carboxyl end into a COO with a minus charge?

Thanks,
Peter

-- 
Peter C. Kahn, Ph.D.
Professor of Biochemistry
Department of Biochemistry & Microbiology
Rutgers University
76 Lipman Drive
New Brunswick, NJ 08901

Telephone: 848-932-5618
Telefax:   732-932-8965
Email: pet...@ru...

[PyMOL] Nonsense mutagenesis

[Jevin P. <jev...@pe...>]

Hi there,

I’m trying to conduct some mutagenesis on a protein, but I have found that PyMol only currently does mutagenesis from one amino acid to another. Is there a way to conduct mutagenesis for point mutations resulting in a termination codon (eg. p.Gln415Ter)?

Addtionally, I am unsure how to do nucleotide mutagenesis on a PDB file that only had an AA sequence. Is there a way to change the amino acid sequence to a nucleotide sequence?

Thank you in advance!

Jevin Parmar

Re: [PyMOL] Did not recieve Email

[Jarrett J. <jar...@sc...>]

Hello Alga,

I'll reach out to you.

Best,
Jarrett J

On Thu, Jun 23, 2022 at 3:11 AM Alga Manggara <alg...@gm...>
wrote:

>  Hello I am Algafari Manggara from Indonesia
> I am a lecture of Pharmacy department Institut Ilmu Kesehatan Bhakti
> Wiyata Kediri
>  I have already registered my email to download PyMOL software for free
> lisence via registration for education. But I didn't get a reply email.
> Thank you.
>
> Best regards,
> Alga Manggara
>
>
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe



-- 

*Jarrett Johnson* | Senior Developer, PyMOL

[PyMOL] Did not recieve Email

[Alga M. <alg...@gm...>]

 Hello I am Algafari Manggara from Indonesia
I am a lecture of Pharmacy department Institut Ilmu Kesehatan Bhakti Wiyata
Kediri
 I have already registered my email to download PyMOL software for free
lisence via registration for education. But I didn't get a reply email.
Thank you.

Best regards,
Alga Manggara

[PyMOL] adding ego objects to an existing object/state

[Randy Z. <rz...@sj...>]

Hi, 

I am trying to add custom graphics to each frame of a trajectory. 

I use split_states to divide the trajectory (multi-pdb file)  into one state per frame, then attempt to load graphics objects into a specific frame:

cmd.load_cgo( obj, name, frame#) 

However, this simply appends the objects into their own states at the end - they are all visible.

I can find no example of attaching graphics to a specific existing state - is it possible?

It seems it must be, as graphics objects like ribbons are associated with a specific molecule ?

Thanks!

Randy

Re: [PyMOL] "PyMOL-users" mailing list

[Jarrett J. <jar...@sc...>]

Hello,

Yes. If you have any questions about how to use PyMOL or best practices,
users of this mailing list can help.Otherwise if you have personal issues
regarding your account or license, then contact he...@sc... .
There is also our github tracker for open-source related questions/queries
( https://github.com/schrodinger/pymol-open-source/issues ).

Best,

Jarrett J

On Tue, Jun 21, 2022 at 9:40 PM Jiaqiao ZHOU <
zhou-jiaqiao1998@g.ecc.u-tokyo.ac.jp> wrote:

> To whom it may concern,
>
> I am sorry, but I wonder if this is the address I should write to
> if I have questions about PyMOL.
>
> Kind regards,
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe



-- 

*Jarrett Johnson* | Senior Developer, PyMOL

Re: [PyMOL] EduPymol Not sending Liscene

[Jarrett J. <jar...@sc...>]

Hi Sophie,

I will email you.

Jarrett J.

On Tue, Jun 21, 2022 at 8:11 PM Sophie Hurwitz <hur...@uw...> wrote:

> Hello,
>
> I'm a PhD biochemistry student and I've tried to sign for the educational
> version of PyMol multiple times, but have still not received an email with
> the licensing code.  Is there a way to work around this problem and get the
> license to activate PyMol?
>
> -
> Sophie
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe



-- 

*Jarrett Johnson* | Senior Developer, PyMOL

[PyMOL] "PyMOL-users" mailing list

[Jiaqiao Z. <zhou-jiaqiao1998@g.ecc.u-tokyo.ac.jp>]

To whom it may concern,

I am sorry, but I wonder if this is the address I should write to
if I have questions about PyMOL.

Kind regards,

[PyMOL] EduPymol Not sending Liscene

[Sophie H. <hur...@uw...>]

Hello,

I'm a PhD biochemistry student and I've tried to sign for the educational
version of PyMol multiple times, but have still not received an email with
the licensing code.  Is there a way to work around this problem and get the
license to activate PyMol?

-
Sophie

Re: [PyMOL] [EXTERNAL] How to get hydrophobic colors??

[Mooers, B. H.M. (HSC) <Bla...@ou...>]

Hi Joaodejota,

The shortcut "yrb" will color the molecular surface to highlight hydrophobicity using the method of Hagemans et al. 2015.
The shortcut is part of a collection of shortcuts found here https://github.com/MooersLab/pymolshortcuts/blob/master/README.md

Best regards,

Blaine

Blaine Mooers, Ph.D.
Associate Professor
Department of Biochemistry and Molecular Biology, College of Medicine
Director of the Laboratory of Biomolecular Structure and Function
Academic Director, Biomolecular Structure Core, COBRE in Structural Biology
Full Member, Cancer Biology Program, Stephenson Cancer Center
University of Oklahoma Health Sciences Center

Mailing Address:
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
Office: 405-271-8300 Lab: 405-271-8312

Websites:
Faculty page: https://basicsciences.ouhsc.edu/bmb/Faculty/bio_details/mooers-blaine-hm-phd
BSC-OKC (LBSF): https://research.ouhsc.edu/Core-Facilities/Laboratory-of-Biomolecular-Structure-and-Function
COBRE in Structural Biology: https://www.ou.edu/structuralbiology
________________________________
From: JJ Oliveira <joa...@gm...>
Sent: Saturday, June 18, 2022 9:27 AM
To: PyM...@li... <PyM...@li...>
Subject: [EXTERNAL] [PyMOL] How to get hydrophobic colors??

Hi guys
Is there a method to detect superficial hydrophobic regions?
Thank you!

[PyMOL] How to get hydrophobic colors??

[JJ O. <joa...@gm...>]

Hi guys
Is there a method to detect superficial hydrophobic regions?
Thank you!

Re: [PyMOL] pymol education license

[Xiang Z. <zx...@ma...>]

Wow, good to hear your advice. Thank you!


-----Original Messages-----
From:"EDUARDO JOSÉ AZEVEDO CORREA" <ed...@ep...>
Sent Time:2022-06-18 03:29:37 (Saturday)
To: "Jarrett Johnson" <jar...@sc...>
Cc: "Xiang Zhang" <zx...@ma...>, "Pymol User list" <pym...@li...>
Subject: Re: [PyMOL] pymol education license


Well I got the educational license for one year.
however, I can get the revalidation.
So I bought the professional license for one year. I negotiate with Schrodinger and Get a reduction in price.
Suggest you to talk with Evan Stoll <eva...@sc...>


Good Luck for you


Em sex., 17 de jun. de 2022 às 15:34, Jarrett Johnson <jar...@sc...> escreveu:

Hello Xiang,


I believe this is an issue being currently worked on. Please send a query to he...@sc...

Best,

Jarrett J


On Fri, Jun 17, 2022 at 12:31 AM Xiang Zhang <zx...@ma...> wrote:




-----Original Messages-----
From:"Xiang Zhang" <zx...@ma...>
Sent Time:2022-06-17 12:13:07 (Friday)
To:pym...@li...
Cc:
Subject: pymol education license

Hi 
I can't receive pymol education license in my mail box even though I tried 2 mail address.


Best,
Xiang Zhang
_______________________________________________
PyMOL-users mailing list
Archives: http://www.mail-archive.com/pym...@li...
Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe




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|

Jarrett Johnson | Senior Developer, PyMOL

|
|
|
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Archives: http://www.mail-archive.com/pym...@li...
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| |

Eduardo José Azevedo Corrêa

Biólogo| Professor e Pesquisador




|
|

(37)9997-5771

(37)3271-4673

www.epamig.br

| |

EPAMIG Pitangui
Rodovia BR - MG352 Km35 Zona Rural


Caixa Postal 43

CEP 35650-000 - Pitangui - MG

|

Re: [PyMOL] pymol education license

[EDUARDO J. A. C. <ed...@ep...>]

Well I got the educational license for one year.
however, I can get the revalidation.
So I bought the professional license for one year. I negotiate with
Schrodinger and Get a reduction in price.
Suggest you to talk with Evan Stoll <eva...@sc...>

Good Luck for you

Em sex., 17 de jun. de 2022 às 15:34, Jarrett Johnson <
jar...@sc...> escreveu:

> Hello Xiang,
>
> I believe this is an issue being currently worked on. Please send a query
> to he...@sc...
>
> Best,
>
> Jarrett J
>
> On Fri, Jun 17, 2022 at 12:31 AM Xiang Zhang <zx...@ma...>
> wrote:
>
>>
>>
>>
>> -----Original Messages-----
>> *From:*"Xiang Zhang" <zx...@ma...>
>> *Sent Time:*2022-06-17 12:13:07 (Friday)
>> *To:* pym...@li...
>> *Cc:*
>> *Subject:* pymol education license
>>
>> Hi
>> I can't receive pymol education license in my mail box even though I
>> tried 2 mail address.
>>
>> Best,
>> Xiang Zhang
>>
>> _______________________________________________
>> PyMOL-users mailing list
>> Archives: http://www.mail-archive.com/pym...@li...
>> Unsubscribe:
>> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
>
>
>
> --
>
> *Jarrett Johnson* | Senior Developer, PyMOL
>
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe



-- 

*Eduardo José Azevedo Corrêa*

Biólogo| Professor e Pesquisador


(37)9997-5771

(37)3271-4673

*www.epamig.br <http://www.epamig.br/>*

*EPAMIG Pitangui*
Rodovia BR - MG352 Km35 Zona Rural

Caixa Postal 43

CEP 35650-000 - Pitangui - MG

Re: [PyMOL] pymol education license

[Jarrett J. <jar...@sc...>]

Hello Xiang,

I believe this is an issue being currently worked on. Please send a query
to he...@sc...

Best,

Jarrett J

On Fri, Jun 17, 2022 at 12:31 AM Xiang Zhang <zx...@ma...>
wrote:

>
>
>
> -----Original Messages-----
> *From:*"Xiang Zhang" <zx...@ma...>
> *Sent Time:*2022-06-17 12:13:07 (Friday)
> *To:* pym...@li...
> *Cc:*
> *Subject:* pymol education license
>
> Hi
> I can't receive pymol education license in my mail box even though I tried
> 2 mail address.
>
> Best,
> Xiang Zhang
>
> _______________________________________________
> PyMOL-users mailing list
> Archives: http://www.mail-archive.com/pym...@li...
> Unsubscribe:
> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe



-- 

*Jarrett Johnson* | Senior Developer, PyMOL