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From: Cameron M. <cm...@uc...> - 2004-11-03 17:23:50
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Cathy, Set the ribbon_trace param to 1 to get a connected C-alpha trace, as in: > load sample_CAs.pdb > set ribbon_trace, 1 > show ribbons Cameron === pym...@li... wrote (on 11/01/2004 09:05 PM): === > > Subject: > [PyMOL] ribbon view of c-alpha only coordinates > From: > Cathy Lawson <cat...@ru...> > Date: > Mon, 01 Nov 2004 12:05:51 -0500 > To: > pym...@li... > > > Dear Fellow Pymolers, > > Some PDB files (notably models fitted into EM density) contain only > C-alpha coordinates. > When read into Pymol, Ive found that the coordinates appear as a > constellation of individual atoms, and selecting a ribbon view doesn't > connect them with lines. > > Anyone know a workaround to view C-alpha atom coordinates in Pymol as > C-alpha traces? > > thanks, > > Cathy Lawson > > > > > *********************************************************************** > Catherine L. Lawson > Laboratory for Structural Biology and Bioinformatics > Department of Chemistry and Chemical Biology > Rutgers University > 610 Taylor Road, Piscataway, NJ 08854 > cat...@ru... > tel 732 445 8074 > fax 732 445 5312 > http://rutchem.rutgers.edu/~lawson > http://roma.rutgers.edu/~lsbb > ********************************************************************* > > > > > -- Cameron Mura UCSD |