[PyMOL] Re: sausage patch to v0.97

[Cameron M. <cm...@uc...>]

Oops, sorry -- first link below should have been 
"http://mccammon.ucsd.edu/~cmura/PyMOL/" (no trailing "ScriptsPatchesEtc/").
Cam.

=== Cameron Mura wrote (on 09/15/2004 07:50 PM): ===

> Hi Warren & others,
>
> I've written a patch to the v0.97 source that enables "sausage"-style 
> cartoon representations based upon B-factor field values. The file 
> ("pymol-0.97cam.patch.tgz") is available for download from the scripts 
> section of my PyMOL homepage 
> ("http://mccammon.ucsd.edu/~cmura/PyMOL/ScriptsPatchesEtc/"), and some 
> sample sausage cartoon images are available towards the bottom of 
> "http://mccammon.ucsd.edu/~cmura/PyMOL/Sandbox/".
>
> This modified PyMOL works fine on my Red Hat 9 Linux set-up, but I 
> haven't tested it otherwise.  Please note that details are available 
> in the tarball's README.txt file, and that this patch is with respect 
> to the v0.97 source at http://pymol.sourceforge.net/obtaining.html 
> (not recent CVS snapshots).
>
> I've termed this representation "saus" (so it's invoked from the PyMOL 
> command line as, e.g., "cartoon saus, all"), and its basic operation 
> is analogous to the "tube"-style cartoons -- i.e., there are 
> 'cartoon_saus_quality' and 'cartoon_saus_radius' settings.
> Please let me know of any questions or problems with its usage.
>
> Best regards,
> Cam.
>
>

-- 
Cameron Mura
UCSD