[PyMOL] Maps in Pymol

[Kelvin L. <kl...@ic...>]

Hi all,

I am having a problem I hope someone can help me with.  I have loaded some 
OMIT maps into pymol.  I want to display the density around my CoA ligand 
and nowhere else.  I have tried using the carve attribute to limit how far 
away from my ligand the density is displayed but to no avail. The problem 
is that no matter how much I play with things I still have small patches 
of density away from the ligand that are showing which makes for a very 
ugly figure.  Am I doing something wrong? Do I have to somehow tell the 
program to display density around each atom in the ligand separately so 
that the carve command has better control of what is shown?  Thanks in 
advance for any help you can provide.

Kelvin Luther
SUNY at Stony Brook
Stony Brook, NY 11794
New York, USA