From: Tony G. <to...@ca...> - 2004-06-02 01:01:03
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Hey everyone, I know I should be past this, but I can't seem to figure out how to do this. I have a couple of crystal structures that contain multiple copies in the asymmetric unit, and I would like to superimpose each copy to see what the differences are. One way is to break the PDB file into one file for each chain, but I'm wondering if there's a better way to handle this in PyMol? One file (1CX8) has 8 copies and the other (1DE4) had three. I tried split_states but it didn't work. I also tried aligning say chain A onto chain B directly but that failed too (as expected). Is there a straightforward way to do this or do I begin splitting these 700 residues proteins up by hand. I wouldn't ask except it's a recurring problem with many of the structures we study so I'm wondering if a general solution or script exists or can be made to deal with this. Tony |