Re: [PyMOL] writing out coordinates

[Robert C. <rl...@po...>]

Craig,

* Craig Smith <boi...@ma...> [2003-09-22 03:30] wrote:
>=20
> I've done a structural alignment of 2 domains using your align command.=
=20
>  How do I write out the new coordinates?

Look at "help save".

USAGE

   save file [,(selection) [,state [,format]] ]


This will save the modified coordinates generated by the alignment.

So:

align protein2 & n. ca, protein1
save protein2_align.pdb, protein2

will save the coordinates for protein2 after it has been aligned with
protein1.

Cheers,
Rob
--=20
Robert L. Campbell, Ph.D.                         <rl...@po...>
Senior Research Associate                            phone: 613-533-6821
Dept. of Biochemistry, Queen's University,             fax: 613-533-2497
Kingston, ON K7L 3N6  Canada       http://adelie.biochem.queensu.ca/~rlc
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