RE: [PyMOL] Bonds

[Warren L. D. <wa...@de...>]

Tsjerk,

	Not currently.  The closest you can achieve is to write out the
PDB file, delete the object, and then read it back in.

- Warren

--
mailto:wa...@de...
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

> -----Original Message-----
> From: pym...@li... [mailto:pymol-users-
> ad...@li...] On Behalf Of Tsjerk Wassenaar
> Sent: Friday, June 27, 2003 1:48 AM
> To: pym...@li...
> Subject: [PyMOL] Bonds
> 
> 
> Hi all!
> 
> I've written a script to position all atoms into a simulation box, but
> the connectivity stays, thus generating a beautiful image of bonds all
> across the box. Though not too clear. Is there a way to update the
> connectivity directly (other than saving the coordinates and
reloading)?
> 
> Cheers,
> 
> Tsjerk
> 
> --
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> -- :)
> -- :) 	Tsjerk A. Wassenaar, M.Sc.
> -- :) 	Molecular Dynamics Group
> -- :) 	Dept. of Biophysical Chemistry
> -- :) 	University of Groningen
> -- :) 	Nijenborgh 4
> -- :) 	9747 AG Groningen
> -- :) 	The Netherlands
> -- :)
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> -- :)
> -- :) 	Hi! I'm a .signature virus!
> -- :) 	Copy me into your ~/.signature to help me spread!
> -- :)
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 
> 
> 
> 
> -------------------------------------------------------
> This SF.Net email is sponsored by: INetU
> Attention Web Developers & Consultants: Become An INetU Hosting
Partner.
> Refer Dedicated Servers. We Manage Them. You Get 10% Monthly
Commission!
> INetU Dedicated Managed Hosting http://www.inetu.net/partner/index.php
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users