Re: [PyMOL] settings for Adobe Premiere

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The output format/compression really depends on the output device you plan
on delivering the final clip to.  Don't go uncompressed unless you have a
killer system that can sustain NTSC and/or PAL (29.97/25fps,
respectively) frame rate.  If it's for presentations and/or the web, 12
f/s is the 'standard'.  For windows, I'd use the divx encoder
(www.divx.com), you can get great compression, small file sizes and great
quality.  The individual settings you'll have to tweak to get what you
find appealing.  I'd avoid older codecs that come prepackaged with
Premiere, they are all mostly outdated and will frustrate you.  For
non-windows, I'd go for Quicktime, compressing quicktime is a diff't
story, I find the file sizes somewhat large for those equivalent in
quality to DIVX files, but then again, I know there are people out there
who are masters at compressing QT movies for web-delivery...

hopefully, this will help you.... feel free to ask more :)

JP Cartailler

3205 McGaugh Hall
Dept. of Molec. Biol. & Biochem.
UC Irvine
Irvine, CA 92697-3900
USA

(949) 824 1797 (T)
jp...@br... (email)
www.cartailler.com (www)

On Tue, 3 Jun 2003, Michael Ford wrote:

> So I have heard that adobe premiere is the best for making movies from 
> the frames.  If I have the frames in .tga format, could anyone sugguest 
> settings for compression, format etc.
> 
> Thanks,
> 
> Mike Ford
> 
> pym...@li... wrote:
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> >Today's Topics:
> >
> >   1. RE: plane2colour (Warren L. DeLano)
> >   2. RE: mpng command (Warren L. DeLano)
> >   3. RE: plane2colour (Warren L. DeLano)
> >   4. Changing lines to be dashed lines (Michael Tallhamer)
> >   5. stereo on rh9 ? (Cameron Mura)
> >   6. (no subject) (mkienetz)
> >   7. Re: (no subject) (Cameron Mura)
> >   8. RE: Changing lines to be dashed lines (Warren L. DeLano)
> >   9. CGOs and TRIANGLE primitive (Mike Brown)
> >  10. 2 questions about Summit drivers w/ Radeon8500 card for stereo... (Cameron Mura)
> >  11. Labels (roidis alexandros)
> >  12. Re: Labels (Scott Classen)
> >  13. RE: Labels (Warren L. DeLano)
> >
> >--__--__--
> >
> >Message: 1
> >From: "Warren L. DeLano" <wa...@de...>
> >To: "'Warren L. DeLano'" <wa...@de...>,
> >	=?iso-8859-1?Q?'Bj=F6rn_Kauppi'?= <bjo...@ka...>,
> >	<pym...@li...>
> >Subject: RE: [PyMOL] plane2colour
> >Date: Tue, 27 May 2003 14:16:58 -0700
> >
> >Whoops, clarification.  I misinterpreted the question...
> >
> >ray_interior_color meets a different need.  So far, there isn't any
> >plane2color-like feature in PyMOL.  Sorry for the confusion.
> >
> >Cheers,
> >Warren
> >
> >-----Original Message-----
> >From: pym...@li...
> >[mailto:pym...@li...] On Behalf Of Warren L.
> >DeLano
> >Sent: Tuesday, May 27, 2003 9:19 AM
> >To: 'Bj=F6rn Kauppi'; pym...@li...
> >Subject: RE: [PyMOL] plane2colour
> >
> >Bjorn,
> >
> >Good news, I just recently added opaque, colored, "insides" of cartoons,
> >surfaces, and spheres to the upcoming release. =20
> >
> >In version 0.88 and beyond, "set interior_color, color-name" will
> >achieve this effect.
> >
> >Cheers,
> >Warren
> >
> >--
> >mailto:wa...@de...
> >Warren L. DeLano
> >Principal Scientist
> >DeLano Scientific LLC
> >Voice (650)-346-1154=20
> >Fax   (650)-593-4020
> >-----Original Message-----
> >From: pym...@li...
> >[mailto:pym...@li...] On Behalf Of Bj=F6rn
> >Kauppi
> >Sent: Tuesday, May 27, 2003 6:49 AM
> >To: pym...@li...
> >Subject: [PyMOL] plane2colour
> >
> >Hi,
> >
> >Is it an equivalent in PyMOL to the plane2colour command in Molscript?
> >i.e. controlling the colour of the "inside" of an cartoon-drawn helix?
> >Or can I get a similar effect with PyMOL somehow?
> >
> >
> >Bj=F6rn
> >
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> >
> >--__--__--
> >
> >Message: 2
> >From: "Warren L. DeLano" <wa...@de...>
> >To: "'Jason Thomas Maynes'" <ja...@bi...>,
> >	<pym...@li...>
> >Subject: RE: [PyMOL] mpng command
> >Date: Tue, 27 May 2003 14:24:57 -0700
> >
> >Jason,
> >
> >	The "mpng" command in recent versions of PyMOL takes two
> >arguments, first and last, which control which frames are rendered.  You
> >can have your script set these appropriately based on where the job is
> >running.
> >
> >Cheers,
> >Warren
> >
> >
> >--
> >mailto:wa...@de...
> >Warren L. DeLano
> >Principal Scientist
> >DeLano Scientific LLC
> >Voice (650)-346-1154 
> >Fax   (650)-593-4020
> >
> >-----Original Message-----
> >From: pym...@li...
> >[mailto:pym...@li...] On Behalf Of Jason
> >Thomas Maynes
> >Sent: Tuesday, May 27, 2003 9:57 AM
> >To: pym...@li...
> >Subject: [PyMOL] mpng command
> >
> >Hello:
> >
> >Does anybody know if you can specify certain movie frames to render and
> >write out (ie. to batch render movie frames on different computers)
> >other
> >than just dicing up one movie into four or five different scripts and
> >piecing them together.
> >
> >Thanks in advance.
> >
> >Cheers,
> >JTM
> >
> >"We can be sure that if a detailed understanding of the molecular basis
> >of
> >chemo-therapeutic activity were to be obtained, the advance of medicine
> >would be greatly accelerated."
> >
> >Linus Pauling, Nobel Laureate 1954
> >
> >"...everything that living things do can be understood in terms of the
> >jigglings and wigglings of atoms."
> >
> >Richard Feynman
> >
> >*************************
> >Jason Thomas Maynes
> >PhD/MD Program
> >Department of Biochemistry
> >Faculty of Medicine
> >University of Alberta
> >ja...@bi...
> >*************************
> >
> >
> >
> >-------------------------------------------------------
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> >If flattening out C++ or Java code to make your application fit in a
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> >
> >
> >
> >--__--__--
> >
> >Message: 3
> >From: "Warren L. DeLano" <wa...@de...>
> >To: =?iso-8859-1?Q?'Bj=F6rn_Kauppi'?= <bjo...@ka...>,
> >	<pym...@li...>
> >Subject: RE: [PyMOL] plane2colour
> >Date: Tue, 27 May 2003 18:37:11 -0700
> >
> >PyMOLer's,=20
> >
> >Okay, with apologies to Per Kraulis, I have implemented Bjorn's request.
> >
> >There is now a "plane2color"-like feature in PyMOL.=20
> >
> >For example figures, see http://pymol.sf.net/ms1.jpg and
> >http://pymol.sf.net/ms2.jpg which were both just created using PyMOL
> >alone, without any reliance on Molscript, though I wouldn=92t have
> >believed it myself if you showed them to me this morning!
> >
> >The new command is:
> >
> >   set cartoon_highlight_color, color-name
> >
> >as in=20
> >
> >   set cartoon_highlight_color, grey70
> >
> >If you can compile PyMOL source code from the CVS repository, then you
> >can access this feature right away.  Otherwise, look for it in the
> >upcoming 0.88 release.
> >
> >Sorry for all the extra traffic on this thread today, but it isn't often
> >that we get a new feature request from a major PyMOL sponsor that can
> >actually be met that same day.
> >
> >Cheers,
> >Warren
> >
> >--
> >mailto:wa...@de...
> >Warren L. DeLano
> >Principal Scientist
> >DeLano Scientific LLC
> >Voice (650)-346-1154=20
> >Fax   (650)-593-4020
> >
> >-----Original Message-----
> >From: Warren L. DeLano [mailto:wa...@de...]=20
> >Sent: Tuesday, May 27, 2003 1:17 PM
> >To: 'Warren L. DeLano'; 'Bj=F6rn Kauppi';
> >'pym...@li...'
> >Subject: RE: [PyMOL] plane2colour
> >
> >Whoops, clarification.  I misinterpreted the question...
> >
> >ray_interior_color meets a different need.  So far, there isn't any
> >plane2color-like feature in PyMOL.  Sorry for the confusion.
> >
> >Cheers,
> >Warren
> >
> >-----Original Message-----
> >From: pym...@li...
> >[mailto:pym...@li...] On Behalf Of Warren L.
> >DeLano
> >Sent: Tuesday, May 27, 2003 9:19 AM
> >To: 'Bj=F6rn Kauppi'; pym...@li...
> >Subject: RE: [PyMOL] plane2colour
> >
> >Bjorn,
> >
> >Good news, I just recently added opaque, colored, "insides" of cartoons,
> >surfaces, and spheres to the upcoming release. =20
> >
> >In version 0.88 and beyond, "set interior_color, color-name" will
> >achieve this effect.
> >
> >Cheers,
> >Warren
> >
> >--
> >mailto:wa...@de...
> >Warren L. DeLano
> >Principal Scientist
> >DeLano Scientific LLC
> >Voice (650)-346-1154=20
> >Fax   (650)-593-4020
> >-----Original Message-----
> >From: pym...@li...
> >[mailto:pym...@li...] On Behalf Of Bj=F6rn
> >Kauppi
> >Sent: Tuesday, May 27, 2003 6:49 AM
> >To: pym...@li...
> >Subject: [PyMOL] plane2colour
> >
> >Hi,
> >
> >Is it an equivalent in PyMOL to the plane2colour command in Molscript?
> >i.e. controlling the colour of the "inside" of an cartoon-drawn helix?
> >Or can I get a similar effect with PyMOL somehow?
> >
> >
> >Bj=F6rn
> >
> >
> >
> >
> >
> >--__--__--
> >
> >Message: 4
> >From: "Michael Tallhamer" <tal...@ho...>
> >To: pym...@li...
> >Date: Wed, 28 May 2003 14:32:21 -0400
> >Subject: [PyMOL] Changing lines to be dashed lines
> >
> >PyMOLers
> >
> >Is it possible to change the lines that represent bonds to dashed lines like 
> >the ones used for distaces so I can change the radius and width parameters.
> >
> >_________________________________________________________________
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> >
> >
> >--__--__--
> >
> >Message: 5
> >Date: Wed, 28 May 2003 12:38:04 -0700
> >From: Cameron Mura <cm...@mc...>
> >Reply-To: cm...@mc...
> >Organization: UCSD
> >To: pym...@li..., o-...@or...
> >Subject: [PyMOL] stereo on rh9 ?
> >
> >[sorry to send this to both lists, but I think it may be applicable...]
> >
> >Dear O & PyMOLers,
> >
> >Have any of you experienced difficulty with stereo on RedHat 9??
> >
> >With PyMOL, trying to switch to stereo view results in the "Error: 
> >Selected stereo mode is not available.", and in O the error is this:
> >"GLUT: Fatal Error in lin_ono_9.0.0: visual with necessary capabilities 
> >not found."  I suspect the root of both problems is the same.
> >
> >I checked the shared library dependencies of O (which seem okay from the 
> >output of "ldd /path-to-o/lin_ono*"), and verified that the glut-3.7-13 
> >  package was installed (rpm -q glut-3.7-13), as well as the following 
> >two Mesa-related packages:
> >
> >XFree86-Mesa-libGLU-4.3.0-2
> >XFree86-Mesa-libGL-4.3.0-2
> >
> >Stereo mode for both of these programs worked fine in a previous 
> >installation in which I was running red hat 8. With the current systems, 
> >I did a fresh install of rh9 (shrike) on two machines:
> >
> >(1) a Dell XEON machine with an NVidia Quadro4 700 XGL graphics card, 
> >using the NVIDIA Kernel Module 1.0-4363 (with a ViewSonic flatpanel 
> >monitor -- so I don't expect to actually do true Quad-buffered stereo 
> >displays or anything like that, mainly just testing)
> >
> >(2) a PC with a ViewSonic P225f CRT monitor (this is the system I would 
> >actually like to use for stereo), powered by an ATI Radeon 8500LE 
> >graphics card.
> >
> >If anyone has encountered similar difficulties or has any helpful hints, 
> >I'd greatly appreciate hearin bout it!
> >
> >	Cameron
> >
> >
> >  
> >
> 
> 
> 
> 
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Re: [PyMOL] settings for Adobe Premiere

PyMOL is an OpenGL based molecular visualization system

Re: [PyMOL] settings for Adobe Premiere