Re: [PyMOL] Protein structures in 2D?

[Francisco M. P. <fra...@ib...>]

before matrix_copy...it moves the symmetry mates to other places...(not
around the original coordinates)

El vie, 20 feb 2026 a la(s) 7:25 p.m., Francisco Murphy Pérez (
fra...@ib...) escribió:

> before all commands...or just before the matrix_copy command?
>
> El vie, 20 feb 2026 a la(s) 4:29 p.m., Jarrett Johnson (
> jar...@sc...) escribió:
>
>> HI Francisco,
>>
>> Yes, this is definitely a bug. We'll address this in the next patch. In
>> the meantime, can you run `set matrix_mode, 1` before doing these commands
>> and see if that helps?
>>
>> Best,
>> Jarrett J
>>
>> On Fri, Feb 20, 2026 at 4:55 PM Francisco Murphy Pérez <
>> fra...@ib...> wrote:
>>
>>> Dear PYMOL users...I found a bug...
>>> or.. Am I doing something wrong?
>>>
>>> got this
>>> ```
>>> fetch 2blx
>>> fetch 2bly
>>> symexp sym2blx, 2blx, (2blx), 4
>>> symexp sym2bly, 2bly, (2bly), 4
>>> align 2bly, 2blx
>>> matrix_copy 2bly, sym2bly*
>>> ```
>>>
>>> Attached are 2 screenshots, before and after the last command
>>>
>>> How do I align symmetry mates?
>>> Most importantly... is this a feature or a bug?
>>> (joking...)
>>>
>>> Any help is appreciated!
>>> Thanks
>>>
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>>
>>
>>
>> --
>>
>> *Jarrett Johnson* | Staff Developer, PyMOL
>>
>>