Re: [PyMOL] Protein structures in 2D?

[Jarrett J. <jar...@sc...>]

HI Francisco,

Yes, this is definitely a bug. We'll address this in the next patch. In the
meantime, can you run `set matrix_mode, 1` before doing these commands and
see if that helps?

Best,
Jarrett J

On Fri, Feb 20, 2026 at 4:55 PM Francisco Murphy Pérez <
fra...@ib...> wrote:

> Dear PYMOL users...I found a bug...
> or.. Am I doing something wrong?
>
> got this
> ```
> fetch 2blx
> fetch 2bly
> symexp sym2blx, 2blx, (2blx), 4
> symexp sym2bly, 2bly, (2bly), 4
> align 2bly, 2blx
> matrix_copy 2bly, sym2bly*
> ```
>
> Attached are 2 screenshots, before and after the last command
>
> How do I align symmetry mates?
> Most importantly... is this a feature or a bug?
> (joking...)
>
> Any help is appreciated!
> Thanks
>
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-- 

*Jarrett Johnson* | Staff Developer, PyMOL