RE: [PyMOL] (no subject)

[DeLano, W. <wa...@su...>]

Question 1, CA-trace: =20

show ribbon
set ribbon_sampling=3D1

(NOTE: requires all main chain atoms to be present, but not necessarily =
visible -- CA-only models will be supported later on).

Question 2, Alignment of structural homologs (requires version 0.82).

load prot1.pdb
load prot2.pdb
align prot1,prot2////ca

This will perform a sequence alignment and then an iterative =
alpha-carbon superposition of matched residues.

Cheers,
Warren


-----Original Message-----
From: Craig Smith [mailto:boi...@ma...]
Sent: Wednesday, October 09, 2002 3:19 PM
To: pym...@li...
Subject: [PyMOL] (no subject)


Hello,=20


On the advice of a friend, I recently downloaded the OSX beta version of =
PyMOL. So far I'm very,very impressed. I have two questions: 1. How do =
you display a simple CA trace. I saw the selection for a backbone trace. =
2. I want to rms-fit two structural homologs. How is this done in PyMOL? =
I tried using the fit command and kept getting errors.=20


Thanks for you help=20



Craig L. Smith, Ph. D.=20
Molecular Microbiology=20
Washington University School of Medicine=20
660 South Euclid Box 8230=20
Voice: (314) 362-9054=20
Fax: (314) 362-1232=20
e-mail: sm...@bo...=20