[PyMOL] Detecting holes/cavities in surface

[Daniel J. <dan...@gm...>]

Hi all,

I haven't used this list before but can't find an answer to my question
elsewhere. I am selecting the antibody binding site automatically to
calculate the surface area of the binding sites.

However, some of the binding sites have holes/cavities in the surface - I
would like to be able to detect if a surface has a hole in it on PyMol (to
make a note that it needs to be looked at manually).

I create an object of the antigen binding site, show surface and then use
get_area to get SASA.

Any help will be appreciated.

Thanks,
Daniel