Re: [PyMOL] cartoon putty present in pymol

[Sampson, J. <Jar...@ny...>]

Hi Wenfu -

Cartoon putty representation varies the diameter of the putty tube based on the B-factor column in the loaded PDB file.  In your example file, all the B-factors are 0.00.  Perhaps you could use `cartoon tube` instead, which is similar to putty, but uses a single cartoon_tube_radius setting to specify the size of the tube.

Cheers,
Jared

--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/






On Apr 13, 2015, at 11:39 AM, ma...@ms...<mailto:ma...@ms...> wrote:

Hi pymol users,

I have a pdb file, which is from the result of a molecular dynamics simulation. I want to present the structure with cartoon putty in pymol.
But I can only make it cartoon putty in Macpymol 0.99 version. When I use pymol1.7 or 1.3 version, the error is like this: Extrude-Warning: invalid putty settings (division by zero)
I attach part of the pdb file and hope to get your suggestions.

Thanks,
Wenfu
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