Re: [PyMOL] representing missing residues in pymol

[H. A. S. <h.a...@gm...>]

This is not as simple as you would like but PyMOL does have the ability to manually build in missing atoms. And this feature allows you to manually fill in missing sequences. I have used it many times to make a specific point, noting that the missing AAs were manually added to the figure.

On Sep 25, 2014, at 8:38 AM, ccp4 pymol <ccp...@gm...> wrote:

> Thank you Thomas.
> 
> Best Regards
> Priyan
> 
> On Thu, Sep 25, 2014 at 5:23 PM, Thomas Holder <tho...@sc...> wrote:
> Hi Priyan,
> 
> unfortunately PyMOL doesn't have such functionality to include missing atoms in the sequence viewer, neither does it read SEQRES records.
> 
> Cheers,
>   Thomas
> 
> On 21 Sep 2014, at 23:28, Priyadarshan <ccp...@gm...> wrote:
> > Hello everyone
> >
> >  Many a times we have structures solved with residues missing as no electron density was seen. The complete sequence information is given in the SEQRES section of PDB. Is there a way in which we can identify the missing residues readily when we turn on the sequence feature by may be putting it in small letters or italicized etc. This would be like asking pymol to read sequence from SEQRES section and compare it to sequence from the section where coordinates are.
> >
> > I am sorry if such a post/request has already been made but I could not find it. Please suggest/direct.
> >
> > Thank you.
> 
> --
> Thomas Holder
> PyMOL Developer
> Schrödinger, Inc.
> 
> 
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