From: Jerome B. <g62...@re...> - 2014-02-14 10:36:45
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Hello, On 05/11/13 15:34, Jason Vertrees wrote: > Hi Jerome, > > PyMOL doesn't yet handle cyclic peptides. It's an open case we hope to > resolve soon. PyMOL 1.7 seems to handle them partially: I have just tried with 2ns4, the formally missing bond is present now (thanks a lot), but the ribbon is still open. To what expand the handling of cyclic peptides is and will be supported ? Best wishes, Jerome > > Cheers, > > -- Jason > > On Tue, Nov 5, 2013 at 1:47 AM, Jerome BENOIT <g62...@re...> wrote: >> Hello Again, >> >> let rephrase my question: >> does PyMOL have support for cyclic peptide (ex. 2NS4) ? >> >> Thanks, >> Jerome >> >> On 29/10/13 17:37, Jerome BENOIT wrote: >>> Hello List, >>> >>> So far I use PyMOL to visualize polygonal chain through an expurged PDB data file when the chain is not ring. >>> Now I would like to visualize chain rings: what is the best way to make PyMOL understand that the two end points coincide ? >>> >>> Thanks in advance, >>> Jerome >>> >>> ------------------------------------------------------------------------------ >>> Android is increasing in popularity, but the open development platform that >>> developers love is also attractive to malware creators. Download this white >>> paper to learn more about secure code signing practices that can help keep >>> Android apps secure. >>> http://pubads.g.doubleclick.net/gampad/clk?id=65839951&iu=/4140/ostg.clktrk >>> _______________________________________________ >>> PyMOL-users mailing list (PyM...@li...) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pym...@li... >>> >> >> ------------------------------------------------------------------------------ >> November Webinars for C, C++, Fortran Developers >> Accelerate application performance with scalable programming models. Explore >> techniques for threading, error checking, porting, and tuning. Get the most >> from the latest Intel processors and coprocessors. See abstracts and register >> http://pubads.g.doubleclick.net/gampad/clk?id=60136231&iu=/4140/ostg.clktrk >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... > > > |