From: Joel T. <joe...@ot...> - 2013-11-05 20:31:58
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Hi Jerome, I am guessing you would be referring to the cartoon representation of the cycic peptide. This is only a workaround but I would usually display the sticks of the covalently linked N-and C termini (main chain atoms). I feel this provides the viewer a better understanding of the peptide itself as you can see where residue 1 is (amide linkage) rather than guessing. Hope this helps -----Original Message----- From: Jerome BENOIT [mailto:g62...@re...] Sent: Tuesday, 5 November 2013 8:47 p.m. To: pym...@li... Subject: Re: [PyMOL] [WAS: polygonal ring] cyclic peptide Hello Again, let rephrase my question: does PyMOL have support for cyclic peptide (ex. 2NS4) ? Thanks, Jerome On 29/10/13 17:37, Jerome BENOIT wrote: > Hello List, > > So far I use PyMOL to visualize polygonal chain through an expurged PDB data file when the chain is not ring. > Now I would like to visualize chain rings: what is the best way to make PyMOL understand that the two end points coincide ? > > Thanks in advance, > Jerome > > ---------------------------------------------------------------------- > -------- Android is increasing in popularity, but the open development > platform that developers love is also attractive to malware creators. > Download this white paper to learn more about secure code signing > practices that can help keep Android apps secure. > http://pubads.g.doubleclick.net/gampad/clk?id=65839951&iu=/4140/ostg.c > lktrk _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: > http://www.mail-archive.com/pym...@li... > ------------------------------------------------------------------------------ November Webinars for C, C++, Fortran Developers Accelerate application performance with scalable programming models. Explore techniques for threading, error checking, porting, and tuning. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60136231&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyM...@li...) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pym...@li... |