Re: [PyMOL] measureing angle between domains

[Jordan W. <jwi...@gm...>]

do you have numpy and psico installed?

http://www.pymolwiki.org/index.php/Psico

Psico has that particular command.

Jordan
On Sep 21, 2013, at 8:45 AM, Ananya Chatterjee <ana...@ya...> wrote:

> Dear all,
> 
> After simulation of my protein I have aligned the initial and the final structure and I could see movement in one domain, now to measure the angle between the domain I used the following lines,
> 
> Select d1, Structure1 and resi 1-160
> Select d2, Structure2 and resi 1-160
> angle_between_domains d1, d2
> 
> and then I am geting following error,
> 
> Traceback (most recent call last):
>   File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 464, in parse
>     exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
>   File "<string>", line 1
>     angle_between_domains d1, d2
>                            ^
> SyntaxError: invalid syntax
> 
> Can any one tell me where am I getting wrong and also is there any other way to measure the angle between the domain moved.
> 
> Thanks in advance
> 
> Ananya
> 
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