From: Ananya C. <ana...@ya...> - 2013-09-21 14:01:13
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Dear all, After simulation of my protein I have aligned the initial and the final structure and I could see movement in one domain, now to measure the angle between the domain I used the following lines, Select d1, Structure1 and resi 1-160 Select d2, Structure2 and resi 1-160 angle_between_domains d1, d2 and then I am geting following error, Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 464, in parse exec(layer.com2+"\n",self.pymol_names,self.pymol_names) File "<string>", line 1 angle_between_domains d1, d2 ^ SyntaxError: invalid syntax Can any one tell me where am I getting wrong and also is there any other way to measure the angle between the domain moved. Thanks in advance Ananya |