From: Chen Z. <che...@gm...> - 2013-06-18 02:36:40
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Dear Pymol Users, I have been trying to configure APBS-1.4 plugin of pymol 1.6 on a Debian Wheezy machine. The initialization is successful, but when I hit "set grid", I got the error message below: *error: 1 <type 'exceptions.UnboundLocalError'> Exception in Tk callback Function: <function <lambda> at 0x33a6938> (type: <type 'function'>) Args: () Traceback (innermost last): File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 1747, in __call__ return apply(self.func, args) File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwDialog.py", line 153, in <lambda> command=lambda self=self, name=name: self._doCommand(name)) File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwDialog.py", line 132, in _doCommand return command(name) File "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line 1075, in execute self.runPsize() File "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line 1096, in runPsize good = self.generatePqrFile() File "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line 1007, in generatePqrFile good = self._generatePdb2pqrPqrFile() File "/usr/local/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py", line 1615, in _generatePdb2pqrPqrFile if retval != 0: <type 'exceptions.UnboundLocalError'>: local variable 'retval' referenced before assignment* Also, although I specified the PATH of APBS and PDB2PQR in apbs_tools.py file, the APBS GUI in pymol is still unable to show the correct path of APBS and PDB2PQR. Thank you so much! Sincerely, Chen |