From: David H. <li...@co...> - 2013-05-07 21:28:50
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sudo port install tk -quartz It has nothing to do with what OS X ships with, it has to do with current macports defaults, which changed around 18 months ago. You can dig around the macports bug reports to see discussion of the change. -David On Tue, May 7, 2013 at 1:32 PM, Rhitankar Pal <rhi...@gm...> wrote: > Hi David, > > I installed tcl without the corefoundation and now while trying to install > pymol I am getting the following error message: > > Error: org.macports.archivefetch for port pymol returned: tk must be > installed without +quartz. > > How can I install tk without +quartz? Are these issues happening because > OSX 10.8.2 comes with preinstalled tcl and tk ? > > Thanks > Rhitankar > > > > > > On Tue, May 7, 2013 at 12:30 PM, David Hall <li...@co...> wrote: > >> by default, macports installs tcl with the +corefoundation variant (see >> http://guide.macports.org/#using.variants ) >> >> if you do: >> >> sudo port install tcl -corefoundation >> >> that will solve the problem. >> >> -David >> >> >> >> >> On Mon, May 6, 2013 at 8:26 PM, Rhitankar Pal <rhi...@gm...>wrote: >> >>> Dear Thomas, >>> >>> One more question. When I tried to install pymol using port [ sudo port >>> install pymol ] I get the following error message: >>> >>> Error: org.macports.archivefetch for port pymol returned: tcl must be >>> installed without +corefoundation. >>> >>> Do you have any idea why there is this error message? >>> >>> Eventually I downloaded the tar.gz and installed it using the setup.py >>> inside. Which is apparently not compatible with the Pmw2 and therefore gave >>> the error I mentioned in my previous email. Any help would be appreciated >>> >>> Thanks >>> Rhitankar >>> >>> >>> >>> >>> >>> On Mon, May 6, 2013 at 8:20 PM, Rhitankar Pal <rhi...@gm...>wrote: >>> >>>> Dear Thomas, >>>> >>>> Now I have installed Pmw.1.3 which should be the one compatible with >>>> python2.7 I guess. However I am still getting the same error. I think pymol >>>> is trying to use Pmw2 by default. Is there any way we can ask it to use 1.3 >>>> instead? >>>> >>>> Thanks for your help >>>> >>>> Rhitankar >>>> >>>> >>>> >>>> On Sat, May 4, 2013 at 6:21 AM, Thomas Holder < >>>> tho...@sc...> wrote: >>>> >>>>> Hi Rhitankar, >>>>> >>>>> looks like you installed the python3 version of Pmw which is not >>>>> compatible with python 2.7. >>>>> >>>>> Cheers, >>>>> Thomas >>>>> >>>>> Rhitankar Pal wrote, On 05/03/13 21:16: >>>>> > Dear Pymol developers, >>>>> > >>>>> > I have recently installed pymol 1.6.x in MAC OS X 10.8.2 and have the >>>>> > following error while opening the GUI >>>>> > >>>>> > Traceback (most recent call last): >>>>> > File "/Library/Python/2.7/site-packages/pmg_tk/__init__.py", line >>>>> 35, >>>>> > in run >>>>> > PMGApp(pymol_instance,skin).run(poll) >>>>> > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line >>>>> 325, >>>>> > in __init__ >>>>> > self.runSkin() >>>>> > File "/Library/Python/2.7/site-packages/pmg_tk/PMGApp.py", line >>>>> 251, >>>>> > in runSkin >>>>> > self.skin.setup() >>>>> > File >>>>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py", >>>>> > line 3661, in setup >>>>> > self.createInterface() >>>>> > File >>>>> > "/Library/Python/2.7/site-packages/pmg_tk/skins/normal/__init__.py", >>>>> > line 3634, in createInterface >>>>> > self.balloon = Pmw.Balloon(self.root) >>>>> > File >>>>> > "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBalloon.py", >>>>> > line 28, in __init__ >>>>> > Pmw.MegaToplevel.__init__(self, parent) >>>>> > File >>>>> "/Library/Python/2.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwBase.py", >>>>> > line 982, in __init__ >>>>> > super().__init__(parent, tkinter.Toplevel) >>>>> > TypeError: super() takes at least 1 argument (0 given) >>>>> > >>>>> > As a result it never opens the "The Pymol Molecular Graphics System" >>>>> > window. Can anyone help to find out what might be wrong. >>>>> > >>>>> > Thanks >>>>> > Rhitankar >>>>> > >>>>> > -- >>>>> > Rhitankar Pal >>>>> > Postdoctoral Researcher, >>>>> > Dept of Chemistry, Yale University >>>>> > New Haven, CT 06511 >>>>> >>>>> -- >>>>> Thomas Holder >>>>> PyMOL Developer >>>>> Schrödinger Contractor >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite >>>>> It's a free troubleshooting tool designed for production >>>>> Get down to code-level detail for bottlenecks, with <2% overhead. >>>>> Download for free and get started troubleshooting in minutes. >>>>> http://p.sf.net/sfu/appdyn_d2d_ap2 >>>>> _______________________________________________ >>>>> PyMOL-users mailing list (PyM...@li...) >>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>>> Archives: >>>>> http://www.mail-archive.com/pym...@li... >>>>> >>>> >>>> >>>> >>>> -- >>>> Rhitankar Pal >>>> Postdoctoral Researcher, >>>> Dept of Chemistry, Yale University >>>> New Haven, CT 06511 >>>> >>> >>> >>> >>> -- >>> Rhitankar Pal >>> Postdoctoral Researcher, >>> Dept of Chemistry, Yale University >>> New Haven, CT 06511 >>> >>> >>> ------------------------------------------------------------------------------ >>> Learn Graph Databases - Download FREE O'Reilly Book >>> "Graph Databases" is the definitive new guide to graph databases and >>> their applications. This 200-page book is written by three acclaimed >>> leaders in the field. The early access version is available now. >>> Download your free book today! http://p.sf.net/sfu/neotech_d2d_may >>> >>> _______________________________________________ >>> PyMOL-users mailing list (PyM...@li...) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pym...@li... >>> >> >> > > > -- > Rhitankar Pal > Postdoctoral Researcher, > Dept of Chemistry, Yale University > New Haven, CT 06511 > |