Re: [PyMOL] Stucked...

[Ivan P. <iv...@gm...>]

Hi Marius,

I just installed pmw, but pymol wasn't change with or without .pymolrc. Is
pmw fundamental component during compiling pymol? I didn't notice any
warning, nor err was prompted, PyMol compiled just fine, the problem was at
runtime.

On Wed, Oct 10, 2012 at 9:52 AM, Marius Retegan
<mar...@gm...>wrote:

> Hi Ivan,
>
> Did you install PMW (http://pmw.sourceforge.net/)?
> You might also want to try running PyMOL with an empty .pymolrc file.
>
> Cheers,
> Marius
>
> On Wed, Oct 10, 2012 at 5:13 AM, Ivan Pavicevic <iv...@gm...> wrote:
> > Dear Jason,
> >
> > After editing ~/.pymolrc and running pymol again, the problem still
> persists
> > with message: " Detected OpenGL version 2.0 or greater.  Shaders
> available."
> > Also, I'm a bit confused about .pymolrc from the link
> > (http://www.pymolwiki.org/index.php/Pymolrc), is there really
> load_sep.py
> > script, or it's just an example of how to launch a script during
> runtime? (I
> > removed that line from rc)
> >
> >
> > On Wed, Oct 10, 2012 at 12:16 AM, Jason Vertrees
> > <jas...@sc...> wrote:
> >>
> >> Ivan,
> >>
> >> Try putting this in your ~/.pymolrc file
> >> (http://www.pymolwiki.org/index.php/Pymolrc):
> >>
> >> set use_shaders, 0
> >> set sphere_mode, 0
> >>
> >> and re-start PyMOL.
> >>
> >> Cheers,
> >>
> >> -- Jason
> >>
> >>
> >> On Tue, Oct 9, 2012 at 3:54 PM, Ivan Pavicevic <iv...@gm...>
> wrote:
> >> > Hi Jason,
> >> >
> >> > I followed compiling instructions from
> >> > http://www.pymolwiki.org/index.php/Linux_Install
> >> > Actually, first attempts were with instructions from INSTALL (setup.py
> >> > build
> >> > install ...) and faced same problem.
> >> > This machine is Lenovo G550 notebook with poor "Intel Graphics Media
> >> > Accelerator 4500MHD" graphics, but I successfully had used PyMol on
> >> > OpenSUSE.
> >> > Cheers,
> >> > Ivan
> >> >
> >> >
> >> > On Tue, Oct 9, 2012 at 3:37 PM, Jason Vertrees
> >> > <jas...@sc...> wrote:
> >> >>
> >> >> Hi Ivan,
> >> >>
> >> >> How did you install PyMOL? What commands did you use?
> >> >>
> >> >> Also, what video card is in your computer?
> >> >>
> >> >> Cheers,
> >> >>
> >> >> -- Jason
> >> >>
> >> >> On Mon, Oct 8, 2012 at 8:07 PM, Ivan Pavicevic <iv...@gm...>
> >> >> wrote:
> >> >> > Dear PyMol users,
> >> >> >
> >> >> > I'm facing very unusual runtime problem. After successful compiling
> >> >> > of
> >> >> > PyMol
> >> >> > 1.5.0.1 on Slackware64 13.37 (actually, this system is S64-current
> >> >> > from
> >> >> > February), and running pymol, program prompting several lines, and
> >> >> > then
> >> >> > goes
> >> >> > in some sort of freeze state.
> >> >> >
> >> >> > The output is:
> >> >> >
> >> >> > bash-4.1$ /opt/pymol-svn/pymol
> >> >> >  PyMOL(TM) Molecular Graphics System, Version 1.5.0.1.
> >> >> >  Copyright (c) Schrodinger, LLC.
> >> >> >  All Rights Reserved.
> >> >> >
> >> >> >     Created by Warren L. DeLano, Ph.D.
> >> >> >
> >> >> >     PyMOL is user-supported open-source software.  Although some
> >> >> > versions
> >> >> >     are freely available, PyMOL is not in the public domain.
> >> >> >
> >> >> >     If PyMOL is helpful in your work or study, then please
> volunteer
> >> >> >     support for our ongoing efforts to create open and affordable
> >> >> > scientific
> >> >> >     software by purchasing a PyMOL Maintenance and/or Support
> >> >> > subscription.
> >> >> >
> >> >> >     More information can be found at "http://www.pymol.org".
> >> >> >
> >> >> >     Enter "help" for a list of commands.
> >> >> >     Enter "help <command-name>" for information on a specific
> >> >> > command.
> >> >> >
> >> >> >  Hit ESC anytime to toggle between text and graphics.
> >> >> >
> >> >> >  Detected OpenGL version 2.0 or greater.  Shaders available.
> >> >> >
> >> >> > Program hasn't any graphical, or further console prompt, and Ctrl+C
> >> >> > can't
> >> >> > terminate the app, the only way is with kill from another virtual
> >> >> > console...
> >> >> > That's it :(
> >> >> > I hope someone knows what's the cause.
> >> >> > --
> >> >> > If you don't care where you are, then you ain't lost
> >> >> >
> >> >> >
> >> >> >
> >> >> >
> >> >> >
> ------------------------------------------------------------------------------
> >> >> > Don't let slow site performance ruin your business. Deploy New
> Relic
> >> >> > APM
> >> >> > Deploy New Relic app performance management and know exactly
> >> >> > what is happening inside your Ruby, Python, PHP, Java, and .NET app
> >> >> > Try New Relic at no cost today and get our sweet Data Nerd shirt
> too!
> >> >> > http://p.sf.net/sfu/newrelic-dev2dev
> >> >> > _______________________________________________
> >> >> > PyMOL-users mailing list (PyM...@li...)
> >> >> > Info Page:
> https://lists.sourceforge.net/lists/listinfo/pymol-users
> >> >> > Archives:
> >> >> > http://www.mail-archive.com/pym...@li...
> >> >>
> >> >>
> >> >>
> >> >> --
> >> >> Jason Vertrees, PhD
> >> >> PyMOL Product Manager
> >> >> Schrödinger, Inc.
> >> >>
> >> >> (e) Jas...@sc...
> >> >> (o) +1 (603) 374-7120
> >> >
> >> >
> >> >
> >> >
> >> > --
> >> > If you don't care where you are, then you ain't lost
> >> >
> >>
> >>
> >>
> >> --
> >> Jason Vertrees, PhD
> >> PyMOL Product Manager
> >> Schrödinger, Inc.
> >>
> >> (e) Jas...@sc...
> >> (o) +1 (603) 374-7120
> >
> >
> >
> >
> > --
> > If you don't care where you are, then you ain't lost
> >
> >
> >
> ------------------------------------------------------------------------------
> > Don't let slow site performance ruin your business. Deploy New Relic APM
> > Deploy New Relic app performance management and know exactly
> > what is happening inside your Ruby, Python, PHP, Java, and .NET app
> > Try New Relic at no cost today and get our sweet Data Nerd shirt too!
> > http://p.sf.net/sfu/newrelic-dev2dev
> > _______________________________________________
> > PyMOL-users mailing list (PyM...@li...)
> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> > Archives: http://www.mail-archive.com/pym...@li...
>



-- 
If you don't care where you are, then you ain't lost