[PyMOL] problem installing/running mengine (freemol)

[Osvaldo M. <alo...@gm...>]

Hi,

I have installed mengine (from freemol)

I download the source code from here
http://www.bioinformatics.org/websvn/listing.php?repname=freemol&path=/&sc=0

and compile the code following this guide (that have the instructions to
install mpeg_encode) http://www.pymolwiki.org/index.php/MovieSchool_6

when I run the clean command (I tried with different molecules and file
formats) I get

 Cleaning 176 atoms.  Please wait...
*** buffer overflow detected ***: /opt/freemol/freemol/bin/mengine.exe
terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7f52aa2eb907]
/lib/x86_64-linux-gnu/libc.so.6(+0x109800)[0x7f52aa2ea800]
/opt/freemol/freemol/bin/mengine.exe[0x45d8d4]
/opt/freemol/freemol/bin/mengine.exe[0x40154f]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed)[0x7f52aa20276d]
/opt/freemol/freemol/bin/mengine.exe[0x401b45]
======= Memory map: ========
00400000-00513000 r-xp 00000000 08:01 273655
/opt/freemol/freemol/bin/mengine.exe
00712000-00713000 r--p 00112000 08:01 273655
/opt/freemol/freemol/bin/mengine.exe
00713000-00726000 rw-p 00113000 08:01 273655
/opt/freemol/freemol/bin/mengine.exe
00726000-007fb000 rw-p 00000000 00:00 0
025cd000-025ee000 rw-p 00000000 00:00 0
[heap]
7f52a9fcb000-7f52a9fe0000 r-xp 00000000 08:01 656749
/lib/x86_64-linux-gnu/libgcc_s.so.1
7f52a9fe0000-7f52aa1df000 ---p 00015000 08:01 656749
/lib/x86_64-linux-gnu/libgcc_s.so.1
7f52aa1df000-7f52aa1e0000 r--p 00014000 08:01 656749
/lib/x86_64-linux-gnu/libgcc_s.so.1
7f52aa1e0000-7f52aa1e1000 rw-p 00015000 08:01 656749
/lib/x86_64-linux-gnu/libgcc_s.so.1
7f52aa1e1000-7f52aa396000 r-xp 00000000 08:01 656703
/lib/x86_64-linux-gnu/libc-2.15.so
7f52aa396000-7f52aa595000 ---p 001b5000 08:01 656703
/lib/x86_64-linux-gnu/libc-2.15.so
7f52aa595000-7f52aa599000 r--p 001b4000 08:01 656703
/lib/x86_64-linux-gnu/libc-2.15.so
7f52aa599000-7f52aa59b000 rw-p 001b8000 08:01 656703
/lib/x86_64-linux-gnu/libc-2.15.so
7f52aa59b000-7f52aa5a0000 rw-p 00000000 00:00 0
7f52aa5a0000-7f52aa699000 r-xp 00000000 08:01 656783
/lib/x86_64-linux-gnu/libm-2.15.so
7f52aa699000-7f52aa898000 ---p 000f9000 08:01 656783
/lib/x86_64-linux-gnu/libm-2.15.so
7f52aa898000-7f52aa899000 r--p 000f8000 08:01 656783
/lib/x86_64-linux-gnu/libm-2.15.so
7f52aa899000-7f52aa89a000 rw-p 000f9000 08:01 656783
/lib/x86_64-linux-gnu/libm-2.15.so
7f52aa89a000-7f52aa8bc000 r-xp 00000000 08:01 656797
/lib/x86_64-linux-gnu/ld-2.15.so
7f52aaa95000-7f52aaa98000 rw-p 00000000 00:00 0
7f52aaab9000-7f52aaabc000 rw-p 00000000 00:00 0
7f52aaabc000-7f52aaabd000 r--p 00022000 08:01 656797
/lib/x86_64-linux-gnu/ld-2.15.so
7f52aaabd000-7f52aaabf000 rw-p 00023000 08:01 656797
/lib/x86_64-linux-gnu/ld-2.15.so
7fffa3128000-7fffa314a000 rw-p 00000000 00:00 0
[stack]
7fffa31a1000-7fffa31a2000 r-xp 00000000 00:00 0
[vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0
[vsyscall]


I am using Ubuntu 12.04

Thanks.