Re: [PyMOL] Adding hydrogens

[Thomas H. <sp...@us...>]

Hi Martin,

do you have "retain_order" set to 1? This is not the default. Try:

unset retain_order
save file.pdb

Cheers,
   Thomas

Martin Hediger wrote, On 09/25/12 18:24:
> Dear PyMOL list
> I'm adding hydrogens to a crystal structure. Upon saving, however, I 
> realize all hydrogens have been added to the beginning of the PDB file. 
> Can PyMOL be configured such that the hydrogens are placed at the 
> "intuitively appropriate" place in the PDB file?
> 
> Thanks for any hints.
> Martin

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen