Re: [PyMOL] preset.ligand_cartoon in pymolrc

[Jason V. <jas...@sc...>]

John,

Put this in your ~/.pymolrc:

import pymol

def my_load(file,obj):
    cmd.load(file,obj)
    preset.ligand_cartoon(obj)

cmd.extend("my_load", my_load)

Then you can load files as,

my_load /path/to/file, object_name


Cheers,

-- Jason



On Wed, Jul 11, 2012 at 12:48 PM, John Amraph <joh...@gm...> wrote:
> Dear collegues,
>
> I need your help in following question. I want to visualize pdb in the
> preset.ligand_cartoon("all",_self=cmd) mode when Pymol is opening the pdb
> file.
> I tried several options:
>
> include preset.ligand_cartoon("all",_self=cmd) in pymolrc
> making a pymol script(from pymol import cmd\
> preset.ligand_cartoon("all",_self=cmd)) and adding run script.py in pymolrc
>
> But that doesn't work.
>
> Thank you!
> John Amraph
>
> PS: OS - Win7, pymol v0.9
>
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...



-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC

(e) Jas...@sc...
(o) +1 (603) 374-7120