Re: [PyMOL] How to overlay different structures?

[Thomas H. <sp...@us...>]

Hi Martin,

I suggest to superpose the conformations with Theseus and use PyMOL for 
visualization.

http://www.theseus3d.org/

You may also try the PyMOL command "alignto" (not available in older 
PyMOL version), but I expect better results with Theseus.

Cheers,
   Thomas

Martin Breugst wrote, On 04/12/12 19:33:
> Dear PyMOL users:
> 
> I want to use PyMOL to generate a nice figure showing six different 
> transition state structures superimposed in one single picture. I have 
> already tried to use the commands pair_fit, overlay, and align but I did 
> not get the results I have expected. Is there any way to tell PyMOL to 
> overlay three atoms of each structure (in order to define a uniform 
> plane) and if there is, what specific command do I have to use?
> 
> Thank you very much for your help and suggestions,
> 
> Cheers,
> 
> Martin

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen