Re: [PyMOL] Is there a *local* version of Cartoon_side_chain_helper?

[Hurt, D. (NIH/N. [E] <dar...@ni...>]

Easiest way to do this is to simple show the C-alpha atom. If you want to
hide the fact that you're doing this, show that single atom as a "line"
not a "stick".



Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)
OCICB/OSMO/OD/NIAID/NIH
 
31 Center Drive, Room 3B62B, MSC 2135
Bethesda, MD 20892-2135
Office  301-402-0095
Mobile 301-758-3559
http://bioinformatics.niaid.nih.gov (Within NIH)
http://exon.niaid.nih.gov (Public)

Disclaimer: The information in this e-mail and any of its attachments is
confidential and may contain sensitive information. It should not be used
by anyone who is not the original intended recipient. If you have received
this e-mail in error please inform the sender and delete it from your
mailbox or any other storage devices. National Institute of Allergy and
Infectious Diseases shall not accept liability for any statements made
that are sender's own and not expressly made on behalf of the NIAID by one
of its representatives.




On 3/14/12 10:24 AM, "Pietro Roversi" <pie...@pa...> wrote:

>Thank you Thomas!
>
>Is there a *local* version of Cartoon_side_chain_helper?
>So that I can keep all other strands flat and only allow one
>to "buckle" in correspondence to a single, specific Calpha?
>
>Regards
>
>Pietro
>________________________________________
>From: Thomas Holder [ad...@th...] On Behalf Of Thomas Holder
>[sp...@us...]
>Sent: 13 March 2012 13:33
>To: Pietro Roversi
>Cc: pymol-users
>Subject: Re: [PyMOL] How do I force a cartoon strand throuch a given
>Calpha?
>
>Hi Petro,
>
>set cartoon_side_chain_helper, 1
>
>http://pymolwiki.org/index.php/Cartoon_side_chain_helper
>
>Cheers,
>   Thomas
>
>On 03/13/2012 01:45 PM, Pietro Roversi wrote:
>> Hello everyone,
>>
>> I am showing the structure in cartoon and a few residues in sticks,
>> I do not want the mainchain atoms only the sidechains, but when
>> I hide the mainchain a few residues in beta sheets
>> lose connectivity to their bet sheet cartoon -
>> how do I force a cartoon strand throuch a given Calpha?
>>
>> Thanks
>>
>> Pietro
>
>--
>Thomas Holder
>MPI for Developmental Biology
>Spemannstr. 35
>D-72076 Tübingen
>
>--------------------------------------------------------------------------
>----
>Virtualization & Cloud Management Using Capacity Planning
>Cloud computing makes use of virtualization - but cloud computing
>also focuses on allowing computing to be delivered as a service.
>http://www.accelacomm.com/jaw/sfnl/114/51521223/
>_______________________________________________
>PyMOL-users mailing list (PyM...@li...)
>Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>Archives: http://www.mail-archive.com/pym...@li...