Re: [PyMOL] New to PyMol. Want to extract sequence from .pse file w/ colors.

[Thomas H. <sp...@us...>]

Hi Shane,

I have a script which saves a colored sequence in HTML format. See 
attachment.

Example usage:

     run save_colored_fasta.py
     save_colored_fasta seq.html

It should be possible to copy&paste the colored sequence from your 
browser to excel.

Cheers,
   Thomas

Shane Neeley wrote, On 02/27/12 01:45:
>     Hi Pymol Network,
> 
>     I would appreciate someones help in extracting the sequence in the
>     viewer above the protein. I have gone through the sequence and
>     changed AAs to different colors based on their position. I would
>     ideally like to be able to copy that sequence with the colors that
>     they are coded so that I could export it to an excel file. Is this
>     possible? 
> 
>     Thanks very much.
> 
>     Shane

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen