Re: [PyMOL] Create a dimer from predicted monomer

[João R. <an...@gm...>]

Hello Karen,

Predicting protein complexes structures is "docking". Pymol should not be
used for this. I would advise you to look at docking software that allows
for symmetrical molecules, such as HADDOCK (http://haddocking.org/) or
SymmDock (http://bioinfo3d.cs.tau.ac.il/SymmDock/).

Best,

João [...] Rodrigues



2011/11/8 Cell Cycle <cel...@gm...>

> Hi,
>
> A fragment of my protein is predicted by I-TASSER to be similar to a
> homodimer module. But the predicted pdb file (named copy) is only a
> monomer. Can I generate a dimer using pymol? I tried symexp sym, copy,
> copy, 2.5, which would work for other known pdb file,  but got the error
> message "no symmetry loaded". Can anyone tell me how to create a dimer from
> my predcited monomer? Thanks,
>
> Karen
>
>
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