Re: [PyMOL] Fog settings for indicidual portions of molecules

[Jason V. <jas...@sc...>]

Hi Andrew,

On Thu, Aug 25, 2011 at 8:51 AM, Malaby, Andrew
<And...@um...> wrote:
> I am working on a figure showing the sticks of one molecule interacting with the surface of another.  I am trying to keep my normal coloring in a figure, but make background portions of the molecule lighter.  I have tried "set fog" followed by chain and residue numbers, to no avail.  The program responds, but no visible change occurs.  I feel that I am missing something inherent in the program.  Any help here would be greatly appreciated.

The fog setting is really a numerical parameter in an equation---not
just on and off. So try,

set fog, 5

set fog, 10

Cheers,

-- Jason

-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) Jas...@sc...
(o) +1 (603) 374-7120